Literature DB >> 30875234

DNA methylation signatures in mendelian developmental disorders as a diagnostic bridge between genotype and phenotype.

Bekim Sadikovic1,2, Erfan Aref-Eshghi1,2, Michael A Levy1,2, David Rodenhiser3,4,5.   

Abstract

Epigenetic and genetic mechanisms regulate the establishment and maintenance of gene expression in its proper context. Recent genome-wide mapping approaches have identified DNA methylation (DNAm) signatures in patients clinically diagnosed with syndromes manifesting as developmental disabilities with intellectual impairments. Here, we review recent studies in which these DNA methylation signatures have enabled highly sensitive and specific screening of such individuals and have clarified ambiguous cases where subjects present with genetic sequence variants of unknown clinical significance (VUS). We propose that these episignatures be considered as echoes and/or legacies of the initiating mutational events within proteins of the so-called epigenetic machinery. As well, we discuss approaches to directly confirm the functional consequences and the implications of these episignatures to patient management and treatment.

Entities:  

Keywords:  DNA methylation; clinical applications; developmental disability; epigenetics and disease; episignature; intellectual disability; microarray

Mesh:

Substances:

Year:  2019        PMID: 30875234     DOI: 10.2217/epi-2018-0192

Source DB:  PubMed          Journal:  Epigenomics        ISSN: 1750-192X            Impact factor:   4.778


  16 in total

1.  Delineation of a Human Mendelian Disorder of the DNA Demethylation Machinery: TET3 Deficiency.

Authors:  David B Beck; Ana Petracovici; Chongsheng He; Hannah W Moore; Raymond J Louie; Muhammad Ansar; Sofia Douzgou; Sivagamy Sithambaram; Trudie Cottrell; Regie Lyn P Santos-Cortez; Eloise J Prijoles; Renee Bend; Boris Keren; Cyril Mignot; Marie-Christine Nougues; Katrin Õunap; Tiia Reimand; Sander Pajusalu; Muhammad Zahid; Muhammad Arif Nadeem Saqib; Julien Buratti; Eleanor G Seaby; Kirsty McWalter; Aida Telegrafi; Dustin Baldridge; Marwan Shinawi; Suzanne M Leal; G Bradley Schaefer; Roger E Stevenson; Siddharth Banka; Roberto Bonasio; Jill A Fahrner
Journal:  Am J Hum Genet       Date:  2020-01-09       Impact factor: 11.025

2.  Histone demethylase KDM5C is a SAHA-sensitive central hub at the crossroads of transcriptional axes involved in multiple neurodevelopmental disorders.

Authors:  Loredana Poeta; Agnese Padula; Benedetta Attianese; Mariaelena Valentino; Lucia Verrillo; Stefania Filosa; Cheryl Shoubridge; Adriano Barra; Charles E Schwartz; Jesper Christensen; Hans van Bokhoven; Kristian Helin; Maria Brigida Lioi; Patrick Collombat; Jozef Gecz; Lucia Altucci; Elia Di Schiavi; Maria Giuseppina Miano
Journal:  Hum Mol Genet       Date:  2019-12-15       Impact factor: 6.150

3.  Evaluation of DNA Methylation Episignatures for Diagnosis and Phenotype Correlations in 42 Mendelian Neurodevelopmental Disorders.

Authors:  Erfan Aref-Eshghi; Jennifer Kerkhof; Victor P Pedro; Mouna Barat-Houari; Nathalie Ruiz-Pallares; Jean-Christophe Andrau; Didier Lacombe; Julien Van-Gils; Patricia Fergelot; Christèle Dubourg; Valerie Cormier-Daire; Sophie Rondeau; François Lecoquierre; Pascale Saugier-Veber; Gaël Nicolas; Gaetan Lesca; Nicolas Chatron; Damien Sanlaville; Antonio Vitobello; Laurence Faivre; Christel Thauvin-Robinet; Frederic Laumonnier; Martine Raynaud; Mariëlle Alders; Marcel Mannens; Peter Henneman; Raoul C Hennekam; Guillaume Velasco; Claire Francastel; Damien Ulveling; Andrea Ciolfi; Simone Pizzi; Marco Tartaglia; Solveig Heide; Delphine Héron; Cyril Mignot; Boris Keren; Sandra Whalen; Alexandra Afenjar; Thierry Bienvenu; Philippe M Campeau; Justine Rousseau; Michael A Levy; Lauren Brick; Mariya Kozenko; Tugce B Balci; Victoria Mok Siu; Alan Stuart; Mike Kadour; Jennifer Masters; Kyoko Takano; Tjitske Kleefstra; Nicole de Leeuw; Michael Field; Marie Shaw; Jozef Gecz; Peter J Ainsworth; Hanxin Lin; David I Rodenhiser; Michael J Friez; Matt Tedder; Jennifer A Lee; Barbara R DuPont; Roger E Stevenson; Steven A Skinner; Charles E Schwartz; David Genevieve; Bekim Sadikovic
Journal:  Am J Hum Genet       Date:  2020-02-27       Impact factor: 11.025

4.  Clinical findings and a DNA methylation signature in kindreds with alterations in ZNF711.

Authors:  Jiyong Wang; Aidin Foroutan; Ellen Richardson; Steven A Skinner; Jack Reilly; Jennifer Kerkhof; Cynthia J Curry; Patrick S Tarpey; Stephen P Robertson; Isabelle Maystadt; Boris Keren; Joanne W Dixon; Cindy Skinner; Rachel Stapleton; Lyse Ruaud; Evren Gumus; Phillis Lakeman; Mariëlle Alders; Matthew L Tedder; Charles E Schwartz; Michael J Friez; Bekim Sadikovic; Roger E Stevenson
Journal:  Eur J Hum Genet       Date:  2022-01-07       Impact factor: 4.246

Review 5.  Applying genomic and transcriptomic advances to mitochondrial medicine.

Authors:  William L Macken; Jana Vandrovcova; Michael G Hanna; Robert D S Pitceathly
Journal:  Nat Rev Neurol       Date:  2021-02-23       Impact factor: 42.937

6.  Gene domain-specific DNA methylation episignatures highlight distinct molecular entities of ADNP syndrome.

Authors:  Eric G Bend; Erfan Aref-Eshghi; David B Everman; R Curtis Rogers; Sara S Cathey; Eloise J Prijoles; Michael J Lyons; Heather Davis; Katie Clarkson; Karen W Gripp; Dong Li; Elizabeth Bhoj; Elaine Zackai; Paul Mark; Hakon Hakonarson; Laurie A Demmer; Michael A Levy; Jennifer Kerkhof; Alan Stuart; David Rodenhiser; Michael J Friez; Roger E Stevenson; Charles E Schwartz; Bekim Sadikovic
Journal:  Clin Epigenetics       Date:  2019-04-27       Impact factor: 6.551

7.  Frameshift mutations at the C-terminus of HIST1H1E result in a specific DNA hypomethylation signature.

Authors:  Andrea Ciolfi; Erfan Aref-Eshghi; Simone Pizzi; Lucia Pedace; Evelina Miele; Jennifer Kerkhof; Elisabetta Flex; Simone Martinelli; Francesca Clementina Radio; Claudia A L Ruivenkamp; Gijs W E Santen; Emilia Bijlsma; Daniela Barge-Schaapveld; Katrin Ounap; Victoria Mok Siu; R Frank Kooy; Bruno Dallapiccola; Bekim Sadikovic; Marco Tartaglia
Journal:  Clin Epigenetics       Date:  2020-01-07       Impact factor: 6.551

Review 8.  The emerging role of chromatin remodelers in neurodevelopmental disorders: a developmental perspective.

Authors:  Britt Mossink; Moritz Negwer; Dirk Schubert; Nael Nadif Kasri
Journal:  Cell Mol Life Sci       Date:  2020-12-02       Impact factor: 9.261

Review 9.  Diagnostic Utility of Genome-Wide DNA Methylation Analysis in Mendelian Neurodevelopmental Disorders.

Authors:  Sadegheh Haghshenas; Pratibha Bhai; Erfan Aref-Eshghi; Bekim Sadikovic
Journal:  Int J Mol Sci       Date:  2020-12-06       Impact factor: 5.923

Review 10.  DNA Methylation in the Diagnosis of Monogenic Diseases.

Authors:  Flavia Cerrato; Angela Sparago; Francesca Ariani; Fulvia Brugnoletti; Luciano Calzari; Fabio Coppedè; Alessandro De Luca; Cristina Gervasini; Emiliano Giardina; Fiorella Gurrieri; Cristiana Lo Nigro; Giuseppe Merla; Monica Miozzo; Silvia Russo; Eugenio Sangiorgi; Silvia M Sirchia; Gabriella Maria Squeo; Silvia Tabano; Elisabetta Tabolacci; Isabella Torrente; Maurizio Genuardi; Giovanni Neri; Andrea Riccio
Journal:  Genes (Basel)       Date:  2020-03-26       Impact factor: 4.096

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