Literature DB >> 30875046

A Method for Single-Stranded Ancient DNA Library Preparation.

Marie-Theres Gansauge1, Matthias Meyer2.   

Abstract

Genomic library preparation from highly degraded DNA is more efficient when library molecules are prepared separately from the complementary strands of DNA fragments. We describe a protocol in which libraries are constructed from single DNA strands in a three-step procedure: single-stranded ligation of the first adapter with T4 DNA ligase in the presence of a splinter oligonucleotide, copying of the DNA strand with a proofreading polymerase, and blunt-end ligation of the second double-stranded adapter with T4 DNA ligase.

Entities:  

Keywords:  Ancient DNA; Library preparation; NGS; Single-stranded ligation; T4 DNA ligase

Mesh:

Substances:

Year:  2019        PMID: 30875046     DOI: 10.1007/978-1-4939-9176-1_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  5 in total

1.  Evaluation of DNA Extraction Methods Developed for Forensic and Ancient DNA Applications Using Bone Samples of Different Age.

Authors:  Catarina Xavier; Mayra Eduardoff; Barbara Bertoglio; Christina Amory; Cordula Berger; Andrea Casas-Vargas; Johannes Pallua; Walther Parson
Journal:  Genes (Basel)       Date:  2021-01-22       Impact factor: 4.096

2.  Development and Optimization of a Silica Column-Based Extraction Protocol for Ancient DNA.

Authors:  Marianne Dehasque; Patrícia Pečnerová; Vendela Kempe Lagerholm; Erik Ersmark; Gleb K Danilov; Peter Mortensen; Sergey Vartanyan; Love Dalén
Journal:  Genes (Basel)       Date:  2022-04-13       Impact factor: 4.141

3.  The diverse genetic origins of a Classical period Greek army.

Authors:  Laurie J Reitsema; Alissa Mittnik; Britney Kyle; Giulio Catalano; Pier Francesco Fabbri; Adam C S Kazmi; Katherine L Reinberger; Luca Sineo; Stefano Vassallo; Rebecca Bernardos; Nasreen Broomandkhoshbacht; Kim Callan; Francesca Candilio; Olivia Cheronet; Elizabeth Curtis; Daniel Fernandes; Martina Lari; Ann Marie Lawson; Matthew Mah; Swapan Mallick; Kirsten Mandl; Adam Micco; Alessandra Modi; Jonas Oppenheimer; Kadir Toykan Özdogan; Nadin Rohland; Kristin Stewardson; Stefania Vai; Chiara Vergata; J Noah Workman; Fatma Zalzala; Valentina Zaro; Alessandro Achilli; Achilles Anagnostopoulos; Cristian Capelli; Varnavas Constantinou; Hovirag Lancioni; Anna Olivieri; Anastasia Papadopoulou; Nikoleta Psatha; Ornella Semino; John Stamatoyannopoulos; Ioanna Valliannou; Evangelia Yannaki; Iosif Lazaridis; Nick Patterson; Harald Ringbauer; David Caramelli; Ron Pinhasi; David Reich
Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-03       Impact factor: 12.779

4.  AuthentiCT: a model of ancient DNA damage to estimate the proportion of present-day DNA contamination.

Authors:  Stéphane Peyrégne; Benjamin M Peter
Journal:  Genome Biol       Date:  2020-09-15       Impact factor: 13.583

5.  A systematic investigation of human DNA preservation in medieval skeletons.

Authors:  Cody Parker; Adam B Rohrlach; Susanne Friederich; Sarah Nagel; Matthias Meyer; Johannes Krause; Kirsten I Bos; Wolfgang Haak
Journal:  Sci Rep       Date:  2020-10-26       Impact factor: 4.379

  5 in total

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