Literature DB >> 30872604

Assessing diversity in multiplex networks.

Laura C Carpi1, Tiago A Schieber2, Panos M Pardalos3, Gemma Marfany4,5, Cristina Masoller6, Albert Díaz-Guilera7,8, Martín G Ravetti9.   

Abstract

Diversity, understood as the variety of different elements or configurations that an extensive system has, is a crucial property that allows maintaining the system's functionality in a changing environment, where failures, random events or malicious attacks are often unavoidable. Despite the relevance of preserving diversity in the context of ecology, biology, transport, finances, etc., the elements or configurations that more contribute to the diversity are often unknown, and thus, they can not be protected against failures or environmental crises. This is due to the fact that there is no generic framework that allows identifying which elements or configurations have crucial roles in preserving the diversity of the system. Existing methods treat the level of heterogeneity of a system as a measure of its diversity, being unsuitable when systems are composed of a large number of elements with different attributes and types of interactions. Besides, with limited resources, one needs to find the best preservation policy, i.e., one needs to solve an optimization problem. Here we aim to bridge this gap by developing a metric between labeled graphs to compute the diversity of the system, which allows identifying the most relevant components, based on their contribution to a global diversity value. The proposed framework is suitable for large multiplex structures, which are constituted by a set of elements represented as nodes, which have different types of interactions, represented as layers. The proposed method allows us to find, in a genetic network (HIV-1), the elements with the highest diversity values, while in a European airline network, we systematically identify the companies that maximize (and those that less compromise) the variety of options for routes connecting different airports.

Entities:  

Year:  2019        PMID: 30872604      PMCID: PMC6418208          DOI: 10.1038/s41598-019-38869-0

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  32 in total

1.  Universal resilience patterns in complex networks.

Authors:  Jianxi Gao; Baruch Barzel; Albert-László Barabási
Journal:  Nature       Date:  2016-02-18       Impact factor: 49.962

2.  Multiplex social ecological network analysis reveals how social changes affect community robustness more than resource depletion.

Authors:  Jacopo A Baggio; Shauna B BurnSilver; Alex Arenas; James S Magdanz; Gary P Kofinas; Manlio De Domenico
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-16       Impact factor: 11.205

Review 3.  HIV Gag polyprotein: processing and early viral particle assembly.

Authors:  Neil M Bell; Andrew M L Lever
Journal:  Trends Microbiol       Date:  2012-12-22       Impact factor: 17.079

4.  Diversity of interaction types and ecological community stability.

Authors:  A Mougi; M Kondoh
Journal:  Science       Date:  2012-07-20       Impact factor: 47.728

Review 5.  HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.

Authors:  Guangdi Li; Erik De Clercq
Journal:  Microbiol Mol Biol Rev       Date:  2016-06-29       Impact factor: 11.056

6.  Replicator dynamics with diffusion on multiplex networks.

Authors:  R J Requejo; A Díaz-Guilera
Journal:  Phys Rev E       Date:  2016-08-01       Impact factor: 2.529

Review 7.  Functions of Tat: the versatile protein of human immunodeficiency virus type 1.

Authors:  Bizhan Romani; Susan Engelbrecht; Richard H Glashoff
Journal:  J Gen Virol       Date:  2009-10-07       Impact factor: 3.891

8.  Detection of composite communities in multiplex biological networks.

Authors:  Laura Bennett; Aristotelis Kittas; Gareth Muirhead; Lazaros G Papageorgiou; Sophia Tsoka
Journal:  Sci Rep       Date:  2015-05-27       Impact factor: 4.379

9.  Synchronization in networks with multiple interaction layers.

Authors:  Charo I Del Genio; Jesús Gómez-Gardeñes; Ivan Bonamassa; Stefano Boccaletti
Journal:  Sci Adv       Date:  2016-11-16       Impact factor: 14.136

10.  Quantification of network structural dissimilarities.

Authors:  Tiago A Schieber; Laura Carpi; Albert Díaz-Guilera; Panos M Pardalos; Cristina Masoller; Martín G Ravetti
Journal:  Nat Commun       Date:  2017-01-09       Impact factor: 14.919

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  1 in total

1.  Clustering analysis of tumor metabolic networks.

Authors:  Ichcha Manipur; Ilaria Granata; Lucia Maddalena; Mario R Guarracino
Journal:  BMC Bioinformatics       Date:  2020-08-21       Impact factor: 3.169

  1 in total

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