| Literature DB >> 30866850 |
Jingjun Wu1, Ailian Liu2, Jingjing Cui3, Anliang Chen1, Qingwei Song1, Lizhi Xie4.
Abstract
BACKGROUND: To evaluate the feasibility of using radiomics with precontrast magnetic resonance imaging for classifying hepatocellular carcinoma (HCC) and hepatic haemangioma (HH).Entities:
Keywords: Classification; Hepatic haemangioma; Hepatocellular carcinoma; Magnetic resonance imaging; Radiomics
Mesh:
Substances:
Year: 2019 PMID: 30866850 PMCID: PMC6417028 DOI: 10.1186/s12880-019-0321-9
Source DB: PubMed Journal: BMC Med Imaging ISSN: 1471-2342 Impact factor: 1.930
Fig. 1Flow diagram of theradiomics analysis
Fig. 2Imaging segmentation on HCC and HH. The ROIs which enclose the boundary of target lesions on in-phase, out-phase, T2WI and DWI are depicted
Radiomics features in the radiomics analysis
| Types | Features | |
|---|---|---|
| First-order statistics ( | Energy, Total Energy, Entropy, Minimum, 10Percentile, 90Percentile, Maximum, Mean, Median, Interquartile Range, Range, Mean Absolute Deviation, Robust Mean Absolute Deviation, Root Mean Squared, Standard Deviation, Skewness, Kurtosis, Variance, Uniformity | |
| Shape ( | Volume, Surface Area, Surface Volume Ratio, Sphericity, Compactness1, Compactness2, Spherical Disproportion, Maximum 3D Diameter, Maximum 2D Diameter Column, Maximum 2D Diameter Row, Major Axis, Minor Axis, Least Axis, Elongation, Flatness | |
| Second-order statistics | GLCM ( | Autocorrelation, Average Intensity, GrayLevel Intensity, Cluster Prominence, Cluster Shade, Cluster Tendency, Contrast, Correlation, Difference Average, Difference Entropy, Difference Variance, Dissimilarity, Energy, Entropy, Homogeneity1, Homogeneity2, Informal Measure Of Correlation1, Informal Measure Of Correlation2, Inverse Difference Moment, Inverse Difference Moment Normalized, Inverse Difference, Inverse Variance, Maximum Probability, Sum Average, Sum Entropy, Sum Variance, Sum of Squares |
| GLRLM ( | Gray Level Non-Uniformity, Gray Level Non Uniformity Normalized, Gray Level Variance, High Gray Level Run Emphasis, Long Run Emphasis, Long Run High Gray Level Emphasis, Long Run Low Gray Level Emphasis, Low Gray Level Run Emphasis, Short Run Emphasis, Short Run High Gray Level Emphasis, Short Run Low Gray Level Emphasis, Run Entropy, Run Length Non Uniformity, Run Length Non Uniformity Normalized, Run Percentage, Run Variance | |
| GLSZM ( | Small Area Emphasis, Large Area Emphasis, Gray Level Non-Uniformity, Gray Level Non-Normalized, Size Zone Non-Uniformity, Size Zone Non-Uniformity Normalized, Zone Percentage, Gray Level Variance, Zone Variance, Zone Entropy, Low Gray Level Zone Emphasis, High Gray Level Zone Emphasis, Small Area Low Gray Level Emphasis, Small Area High Gray Level Emphasis, Large Area Low Gray Level Emphasis, Large Area High Gray Level Emphasis | |
| Higher-order statistics (n = 936) | First- and second-order features are transformed by Exponential, Square, Square Root, Logarithm, Wavelet (wavelet-LHL,wavelet-LHH,wavelet-HLL,wavelet-LLH,wavelet-HLH,wavelet-HHH,wavelet-HHL,wavelet-LLL) | |
Note: GLCM, Gray Level Co-occurence Matrix; GLRLM, Gray Level Run Length Matrix;
GLSZM, Gray Level Size Zone Matrix; L, low; H, high
Fig. 3LASSO model on in-phase images. The optimal value of the lasso tuning parameter (alpha = 1.738) is found. And 22 features which are correspond to the optimal alpha value are extracted following coefficients on in-phase images
Fig. 4LASSO model on out-phase images. The optimal value of the lasso tuning parameter (alpha =1.823) is found. And 24 features which are correspond to the optimal alpha value are extracted following coefficients on out-phase images
Fig. 5LASSO model on T2WI images. The optimal value of the lasso tuning parameter (alpha = 1.920) is found. And 34 features which are correspond to the optimal alpha value are extracted following coefficients on T2WI images
Fig. 6LASSO model on DWI images. The optimal value of the lasso tuning parameter (alpha = 1.903) is found. And 24 features which are correspond to the optimal alpha value are extracted following coefficients on DWI images
ROC analysis by the four classifiers in testing set
| Decision Tree | Random Forest | ||||||
|---|---|---|---|---|---|---|---|
| Images | AUC | Sensitivity | Specificity | Images | AUC | Sensitivity | Specificity |
| In-phase | 0.63 | 0.67 | 0.64 | In-phase | 0.74 | 0.83 | 0.62 |
| Out-phase | 0.73 | 0.83 | 0.68 | Out-phase | 0.78 | 0.79 | 0.77 |
| T2WI | 0.68 | 0.72 | 0.68 | T2WI | 0.76 | 0.90 | 0.68 |
| DWI | 0.63 | 0.69 | 0.62 | DWI | 0.73 | 0.81 | 0.66 |
| Combined | 0.76 | 0.80 | 0.69 | Combined | 0.86 | 0.82 | 0.786 |
| K Nearest Neighbours | Logistic Regression | ||||||
| Images | AUC | Sensitivity | Specificity | Images | AUC | Sensitivity | Specificity |
| In-phase | 0.66 | 0.73 | 0.57 | In-phase | 0.72 | 0.81 | 0.64 |
| Out-phase | 0.58 | 0.57 | 0.60 | Out-phase | 0.77 | 0.74 | 0.79 |
| T2WI | 0.63 | 0.69 | 0.56 | T2WI | 0.80 | 0.82 | 0.78 |
| DWI | 0.65 | 0.69 | 0.62 | DWI | 0.65 | 0.83 | 0.47 |
| Combined | 0.76 | 0.778 | 0.653 | Combined | 0.89 | 0.822 | 0.714 |
AUC, area under receiver-operating characteristic curve; T2WI, T2-weighted imaging; DWI, diffusion-weighted imaging