Literature DB >> 30864741

Genome‑wide profiling of lncRNA and mRNA expression in CRSwNP.

Minglei Liu1, Ping Guo1, Jun An1, Chao Guo2, Fengxiang Lu1, Yanhua Lei1.   

Abstract

Chronic rhinosinusitis with nasal polyps (CRSwNP) is one of the most prevalent chronic diseases. In patients with CRSwNP, the present study performed comprehensive bioinformatics analyses to characterize the transcriptome profiles of mRNAs and long non‑coding RNAs (lncRNAs). A total of 265 differentially expressed lncRNAs and 994 mRNAs were identified. The majority of up‑ and downregulated differentially expressed genes were significantly enriched in the biological process of 'signal transduction'. The most significantly enriched molecular function was 'protein binding' and the most significantly enriched cellular component was 'membrane'. Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis led to identification of several significantly enriched pathways [false discovery rate (FDR)<0.05], including 'cytokine‑cytokine receptor interaction' (FDR=3.94x1016) and 'cell adhesion molecules' (CAMs) (FDR=1.28x10‑5). Key differentially expressed lncRNAs were identified, including lncRNA XLOC_010280, which regulates chemokine (C‑C motif) ligand 18 (CCL18) and inflammation, and RP11‑798M19.6, which regulates polypeptide N‑acetylgalactosaminyltransferase 7 (GALNT7) and cell proliferation. Based on the results of reverse transcription‑quantitative polymerase chain reaction, except for CCL8, neural precursor cell expressed developmentally downregulated gene 4‑like and GALNT7, the expression of 3 other selected genes was consistent with the results of integrated analysis. The results of the present study provide a foundation for future investigations into mRNAs and lncRNAs as diagnostic and therapeutic targets in CRSwNP.

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Year:  2019        PMID: 30864741     DOI: 10.3892/mmr.2019.10005

Source DB:  PubMed          Journal:  Mol Med Rep        ISSN: 1791-2997            Impact factor:   2.952


  5 in total

1.  Transcriptomic Signatures and Functional Network Analysis of Chronic Rhinosinusitis With Nasal Polyps.

Authors:  Yun Hao; Yan Zhao; Ping Wang; Kun Du; Ying Li; Zhen Yang; Xiangdong Wang; Luo Zhang
Journal:  Front Genet       Date:  2021-02-02       Impact factor: 4.599

2.  Downregulation of circFASTKD1 ameliorates myocardial infarction by promoting angiogenesis.

Authors:  Wen-Qing Gao; Xiao-Min Hu; Qiang Zhang; Lan Yang; Xin-Ze Lv; Shuang Chen; Peng Wu; Da-Wei Duan; Yu-Heng Lang; Meng Ning; Ke-Guan Lai; Zhi-Yuan Zhang; Bin Liang; Jing-Yu Bao; Hai-Dong Wu; Tong Li
Journal:  Aging (Albany NY)       Date:  2020-12-19       Impact factor: 5.682

3.  Transcriptional Changes in Chronic Rhinosinusitis with Asthma Favor a Type 2 Molecular Endotype Independent of Polyp Status.

Authors:  Amarbir S Gill; Abigail Pulsipher; Jorgen S Sumsion; Gretchen M Oakley; Laurie W Leclair; Heather Howe; Richard R Orlandi; Jeremiah A Alt
Journal:  J Asthma Allergy       Date:  2021-04-21

4.  Cell Adhesion Molecules are Upregulated and May Drive Inflammation in Chronic Rhinosinusitis with Nasal Polyposis.

Authors:  Brennan J Blight; Amarbir S Gill; Jorgen S Sumsion; Chelsea E Pollard; Shaelene Ashby; Gretchen M Oakley; Jeremiah A Alt; Abigail Pulsipher
Journal:  J Asthma Allergy       Date:  2021-05-27

Review 5.  Nasal Polyposis: Insights in Epithelial-Mesenchymal Transition and Differentiation of Polyp Mesenchymal Stem Cells.

Authors:  Emanuela Chiarella; Nicola Lombardo; Nadia Lobello; Annamaria Aloisio; Teodoro Aragona; Corrado Pelaia; Stefania Scicchitano; Heather Mandy Bond; Maria Mesuraca
Journal:  Int J Mol Sci       Date:  2020-09-19       Impact factor: 5.923

  5 in total

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