Literature DB >> 30864387

False discovery control for penalized variable selections with high-dimensional covariates.

Kevin He1, Xiang Zhou1, Hui Jiang1,2, Xiaoquan Wen1,2, Yi Li1,2.   

Abstract

Modern bio-technologies have produced a vast amount of high-throughput data with the number of predictors much exceeding the sample size. Penalized variable selection has emerged as a powerful and efficient dimension reduction tool. However, control of false discoveries (i.e. inclusion of irrelevant variables) for penalized high-dimensional variable selection presents serious challenges. To effectively control the fraction of false discoveries for penalized variable selections, we propose a false discovery controlling procedure. The proposed method is general and flexible, and can work with a broad class of variable selection algorithms, not only for linear regressions, but also for generalized linear models and survival analysis.

Entities:  

Keywords:  dimension reduction; false discovery; penalized regression; variable selection

Mesh:

Year:  2018        PMID: 30864387      PMCID: PMC6450074          DOI: 10.1515/sagmb-2018-0038

Source DB:  PubMed          Journal:  Stat Appl Genet Mol Biol        ISSN: 1544-6115


  12 in total

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3.  Component-wise gradient boosting and false discovery control in survival analysis with high-dimensional covariates.

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Journal:  Bioinformatics       Date:  2015-09-17       Impact factor: 6.937

4.  Penalized Cox regression analysis in the high-dimensional and low-sample size settings, with applications to microarray gene expression data.

Authors:  Jiang Gui; Hongzhe Li
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6.  Discussion of "Sure Independence Screening for Ultra-High Dimensional Feature Space.

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7.  Estimation and Accuracy after Model Selection.

Authors:  Bradley Efron
Journal:  J Am Stat Assoc       Date:  2014-07-01       Impact factor: 5.033

8.  Differential expression analysis for RNAseq using Poisson mixed models.

Authors:  Shiquan Sun; Michelle Hood; Laura Scott; Qinke Peng; Sayan Mukherjee; Jenny Tung; Xiang Zhou
Journal:  Nucleic Acids Res       Date:  2017-06-20       Impact factor: 16.971

9.  Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent.

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10.  SNP selection in genome-wide and candidate gene studies via penalized logistic regression.

Authors:  Kristin L Ayers; Heather J Cordell
Journal:  Genet Epidemiol       Date:  2010-12       Impact factor: 2.135

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