Literature DB >> 30859553

A hybrid omnibus test for generalized semiparametric single-index models with high-dimensional covariate sets.

Yangyi Xu1, Inyoung Kim1, Raymond J Carroll2,3.   

Abstract

Numerous statistical methods have been developed for analyzing high-dimensional data. These methods often focus on variable selection approaches but are limited for the purpose of testing with high-dimensional data. They are often required to have explicit-likelihood functions. In this article, we propose a "hybrid omnibus test" for high-dicmensional data testing purpose with much weaker requirements. Our hybrid omnibus test is developed under a semiparametric framework where a likelihood function is no longer necessary. Our test is a version of a frequentist-Bayesian hybrid score-type test for a generalized partially linear single-index model, which has a link function being a function of a set of variables through a generalized partially linear single index. We propose an efficient score based on estimating equations, define local tests, and then construct our hybrid omnibus test using local tests. We compare our approach with an empirical-likelihood ratio test and Bayesian inference based on Bayes factors, using simulation studies. Our simulation results suggest that our approach outperforms the others, in terms of type I error, power, and computational cost in both the low- and high-dimensional cases. The advantage of our approach is demonstrated by applying it to genetic pathway data for type II diabetes mellitus.
© 2019 International Biometric Society.

Entities:  

Keywords:  hybrid; omnibus; score function; single index; spline approximation

Mesh:

Year:  2019        PMID: 30859553      PMCID: PMC6736718          DOI: 10.1111/biom.13054

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  15 in total

1.  GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways.

Authors:  Kam D Dahlquist; Nathan Salomonis; Karen Vranizan; Steven C Lawlor; Bruce R Conklin
Journal:  Nat Genet       Date:  2002-05       Impact factor: 38.330

2.  Inferring pathways from gene lists using a literature-derived network of biological relationships.

Authors:  Dilip Rajagopalan; Pankaj Agarwal
Journal:  Bioinformatics       Date:  2004-10-27       Impact factor: 6.937

3.  Serum- and glucocorticoid-inducible kinase 1 mediates salt sensitivity of glucose tolerance.

Authors:  Krishna M Boini; Anita M Hennige; Dan Yang Huang; Björn Friedrich; Monica Palmada; Christoph Boehmer; Florian Grahammer; Ferruh Artunc; Susanne Ullrich; Diana Avram; Hartmut Osswald; Peer Wulff; Dietmar Kuhl; Volker Vallon; Hans-Ulrich Häring; Florian Lang
Journal:  Diabetes       Date:  2006-07       Impact factor: 9.461

4.  Islet autoimmunity and genetic mutations in Chinese subjects initially thought to have Type 1B diabetes.

Authors:  D Zhang; Z Zhou; L Li; J Weng; G Huang; P Jing; C Zhang; J Peng; L Xiu
Journal:  Diabet Med       Date:  2006-01       Impact factor: 4.359

5.  Local and omnibus goodness-of-fit tests in classical measurement error models.

Authors:  Yanyuan Ma; Jeffrey D Hart; Ryan Janicki; Raymond J Carroll
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2011-01-01       Impact factor: 4.488

6.  Identifying biological themes within lists of genes with EASE.

Authors:  Douglas A Hosack; Glynn Dennis; Brad T Sherman; H Clifford Lane; Richard A Lempicki
Journal:  Genome Biol       Date:  2003-09-11       Impact factor: 13.583

7.  Association of SGK1 gene polymorphisms with type 2 diabetes.

Authors:  Matthias Schwab; Adrian Lupescu; Maria Mota; Eugen Mota; Andreas Frey; Perikles Simon; Peter R Mertens; Jurgen Floege; Friedrich Luft; Steven Asante-Poku; Elke Schaeffeler; Florian Lang
Journal:  Cell Physiol Biochem       Date:  2008-01-16

8.  Differences in gene expression profiles of diabetic and nondiabetic patients undergoing cardiopulmonary bypass and cardioplegic arrest.

Authors:  Pierre Voisine; Marc Ruel; Tanveer A Khan; Cesario Bianchi; Shu-Hua Xu; Isaac Kohane; Towia A Libermann; Hasan Otu; Alan R Saltiel; Frank W Sellke
Journal:  Circulation       Date:  2004-09-14       Impact factor: 29.690

9.  High glucose-induced membrane translocation of PKC betaI is associated with Arf6 in glomerular mesangial cells.

Authors:  Anoop Kumar Padival; Karen S Hawkins; Chunfa Huang
Journal:  Mol Cell Biochem       Date:  2004-03       Impact factor: 3.396

10.  PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes.

Authors:  Vamsi K Mootha; Cecilia M Lindgren; Karl-Fredrik Eriksson; Aravind Subramanian; Smita Sihag; Joseph Lehar; Pere Puigserver; Emma Carlsson; Martin Ridderstråle; Esa Laurila; Nicholas Houstis; Mark J Daly; Nick Patterson; Jill P Mesirov; Todd R Golub; Pablo Tamayo; Bruce Spiegelman; Eric S Lander; Joel N Hirschhorn; David Altshuler; Leif C Groop
Journal:  Nat Genet       Date:  2003-07       Impact factor: 38.330

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