Literature DB >> 30857388

Multi-Omics Strategies Uncover Host-Pathogen Interactions.

Mohd M Khan1,2, Orna Ernst1, Nathan P Manes1, Benjamin L Oyler2, Iain D C Fraser1, David R Goodlett3, Aleksandra Nita-Lazar1.   

Abstract

With the success of the Human Genome Project, large-scale systemic projects became a reality that enabled rapid development of the systems biology field. Systems biology approaches to host-pathogen interactions have been instrumental in the discovery of some specifics of Gram-negative bacterial recognition, host signal transduction, and immune tolerance. However, further research, particularly using multi-omics approaches, is essential to untangle the genetic, immunologic, (post)transcriptional, (post)translational, and metabolic mechanisms underlying progression from infection to clearance of microbes. The key to understanding host-pathogen interactions lies in acquiring, analyzing, and modeling multimodal data obtained through integrative multi-omics experiments. In this article, we will discuss how multi-omics analyses are adding to our understanding of the molecular basis of host-pathogen interactions and systemic maladaptive immune response of the host to microbes and microbial products.

Entities:  

Keywords:  Gram-negative bacteria; host−pathogen interactions; lipopolysaccharide; mass spectrometry; multi-omics

Mesh:

Year:  2019        PMID: 30857388     DOI: 10.1021/acsinfecdis.9b00080

Source DB:  PubMed          Journal:  ACS Infect Dis        ISSN: 2373-8227            Impact factor:   5.084


  13 in total

Review 1.  Activity-based protein profiling in bacteria: Applications for identification of therapeutic targets and characterization of microbial communities.

Authors:  Laura J Keller; Brett M Babin; Markus Lakemeyer; Matthew Bogyo
Journal:  Curr Opin Chem Biol       Date:  2019-12-10       Impact factor: 8.822

2.  Editorial: Evolutionary Mechanisms of Infectious Diseases.

Authors:  Jianying Gu; Zhan Zhou; Yufeng Wang
Journal:  Front Microbiol       Date:  2021-05-13       Impact factor: 5.640

3.  Precision omics data integration and analysis with interoperable ontologies and their application for COVID-19 research.

Authors:  Zhigang Wang; Yongqun He
Journal:  Brief Funct Genomics       Date:  2021-07-17       Impact factor: 4.840

Review 4.  From the micro to the macro to improve health: microorganism ecology and society in teaching infectious disease epidemiology.

Authors:  Maryam Shahmanesh; Guy Harling; Cordelia E M Coltart; Heather Bailey; Carina King; Jo Gibbs; Janet Seeley; Andrew Phillips; Caroline A Sabin; Robert W Aldridge; Pam Sonnenberg; Graham Hart; Mike Rowson; Deenan Pillay; Anne M Johnson; Ibrahim Abubakar; Nigel Field
Journal:  Lancet Infect Dis       Date:  2020-05-07       Impact factor: 25.071

5.  Glycomics Microarrays Reveal Differential In Situ Presentation of the Biofilm Polysaccharide Poly-N-acetylglucosamine on Acinetobacter baumannii and Staphylococcus aureus Cell Surfaces.

Authors:  Andrea Flannery; Marie Le Berre; Gerald B Pier; James P O'Gara; Michelle Kilcoyne
Journal:  Int J Mol Sci       Date:  2020-04-02       Impact factor: 5.923

6.  Systematic Review of Multi-Omics Approaches to Investigate Toxicological Effects in Macrophages.

Authors:  Isabel Karkossa; Stefanie Raps; Martin von Bergen; Kristin Schubert
Journal:  Int J Mol Sci       Date:  2020-12-09       Impact factor: 5.923

Review 7.  Conceptualization of population-specific human functional immune-genomics projects to identify factors that contribute to variability in immune and infectious diseases.

Authors:  Collins K Boahen; Leo A B Joosten; Mihai G Netea; Vinod Kumar
Journal:  Heliyon       Date:  2021-04-13

Review 8.  How to Unravel the Key Functions of Cryptic Oomycete Elicitin Proteins and Their Role in Plant Disease.

Authors:  Aayushree Kharel; Md Tohidul Islam; James Rookes; David Cahill
Journal:  Plants (Basel)       Date:  2021-06-12

9.  Transcriptomics Analysis Uncovers Transient Ceftazidime Tolerance in Burkholderia Biofilms.

Authors:  Supaksorn Chattagul; Mohd M Khan; Alison J Scott; Aleksandra Nita-Lazar; Robert K Ernst; David R Goodlett; Rasana W Sermswan
Journal:  ACS Infect Dis       Date:  2021-06-17       Impact factor: 5.578

Review 10.  An Organ System-Based Synopsis of Pseudomonas aeruginosa Virulence.

Authors:  Charles D Morin; Eric Déziel; Jeff Gauthier; Roger C Levesque; Gee W Lau
Journal:  Virulence       Date:  2021-12       Impact factor: 5.882

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