| Literature DB >> 30857178 |
Hayley Joseph1,2, Sarah Sullivan3, Peter Wood4,5, Wayne Melrose6, Fasihah Taleo7, Patricia Graves8.
Abstract
As the prevalence of lymphatic filariasis declines, it becomes crucial to adequately eliminate residual areas of endemicity and implement surveillance. To this end, serological assays have been developed, including the Bm14 Filariasis CELISA which recommends a specific optical density cut-off level. We used mixture modelling to assess positive cut-offs of Bm14 serology in children in Vanuatu using historical OD (Optical Density) ELISA values collected from a transmission assessment survey (2005) and a targeted child survey (2008). Mixture modelling is a statistical technique using probability distributions to identify subpopulations of positive and negative results (absolute cut-off value) and an 80% indeterminate range around the absolute cut-off (80% cut-off). Depending on programmatic choices, utilizing the lower 80% cut-off ensures the inclusion of all likely positives, however with the trade-off of lower specificity. For 2005, country-wide antibody prevalence estimates varied from 6.4% (previous cut-off) through 9.0% (absolute cut-off) to 17.3% (lower 80% cut-off). This corroborated historical evidence of hotspots in Pentecost Island in Penama province. For 2008, there were no differences in the prevalence rates using any of the thresholds. In conclusion, mixture modelling is a powerful tool that allows closer monitoring of residual transmission spots and these findings supported additional monitoring which was conducted in Penama in later years. Utilizing a statistical data-based cut-off, as opposed to a universal cut-off, may help guide program decisions that are better suited to the national program.Entities:
Keywords: Bm14; CELISA; R statistics; elimination; filariasis; mixture modelling; serology; surveillance
Year: 2019 PMID: 30857178 PMCID: PMC6473238 DOI: 10.3390/tropicalmed4010045
Source DB: PubMed Journal: Trop Med Infect Dis ISSN: 2414-6366
2005 TAS (Transmission Assessment Survey)1/C survey sites, number of samples taken from children aged up to 10 years of age and the prevalence of Bm14 antibody as determined based on cut-off 1 (original cut-off).
| Province | Island | Village | Number of Samples | % Prevalence |
|---|---|---|---|---|
| Malampa | Ambrym | Maat | 20 | 10 |
| Nova—Londre | 27 | 11.1 | ||
| Sameou | 26 | 0 | ||
| Maranata | 5 | 0 | ||
| Malekula | Dravai/Lamap | 53 | 1.9 | |
| P.R.V. | 36 | 0 | ||
| Wala Mainland | 24 | 0 | ||
| Pikaier | 19 | 5.3 | ||
| Lawa | 14 | 7.1 | ||
| Melken | 19 | 5.3 | ||
| Pandeur | 16 | 0 | ||
| Paama | Liro | 26 | 3.8 | |
| Sanma | Santo | Malotau | 16 | 0 |
| Tanavoli | 19 | 5.3 | ||
| Penama | Ambae | Lovositarivue | 2 | 0 |
| Maewo | Naviso | 31 | 38.7 | |
| Rembu | 6 | 0 | ||
| Nasawa | 14 | 7.1 | ||
| Pentecost | Baie Barrier | 39 | 0 | |
| Abwatunbuliva | 19 | 5.38 | ||
| Lalbung | 18 | 5.6 | ||
| Laone | 19 | 0 | ||
| Leravinanposvi | 21 | 0 | ||
| Likasak | 4 | 0 | ||
| Melsisi | 4 | 0 | ||
| Namaram | 17 | 23.5 | ||
| Pannas | 11 | 0 | ||
| Shefa | Efate | Erakor | 17 | 17.6 |
| Eratap | 14 | 14.3 | ||
| Mele | 15 | 0 | ||
| Paonangisu | 15 | 0 | ||
| Rango Rango | 22 | 0 | ||
| Epi | Brisbane | 11 | 0 | |
| Lamenu Bay | 26 | 3.8 | ||
| Mate | 9 | 0 | ||
| Tafea | Aniwa | Ikaokao | 39 | 0 |
| Futuna | Iasoa | 9 | 11.1 | |
| Matangi | 15 | 6.7 | ||
| Tanna | Eniai | 20 | 0 | |
| Fetukai | 30 | 20 | ||
| Ipai | 14 | 7.1 | ||
| Ikakahak | 30 | 43.3 | ||
| Ikapow | 1 | 0 | ||
| Imafen | 48 | 0 | ||
| Imereupow | 50 | 4 | ||
| Isiai | 8 | 12.5 | ||
| Lahwenuwi | 10 | 0 | ||
| Lenaken | 24 | 4.2 | ||
| Lenawawa | 16 | 0 | ||
| Lounapaio | 9 | 11.1 | ||
| Lounapkao | 10 | 0 | ||
| Lowkwaria | 40 | 7.5 | ||
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2008 Targeted Child Survey, number of samples taken from children aged up to 10 years of age and the prevalence of Bm14 antibody as determined based on cut-off 1 (original cut-off).
| Province | Island | Village | Number of samples | % prevalence |
|---|---|---|---|---|
| Penama | Ambae | Nanako | 14 | 7.1 |
| Pentecost | Bai Martelli | 17 | 5.9 | |
| Hot Wota | 1 | 0 | ||
| Londar | 29 | 10.3 | ||
| Lonlebule | 2 | 0 | ||
| Namaram | 12 | 41.7 | ||
| Pannas | 1 | 0 | ||
| Point Cross | 74 | 1.4 | ||
| Ranliae | 4 | 0 | ||
| Ranputor | 1 | 0 | ||
| Vansemakul | 1 | 0 | ||
| Wanur | 31 | 0 | ||
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Figure 1Mixture modelling analysis for the 2005 Transmission Assessment Survey/C Survey in Vanuatu: (a) The distribution of data from the 1027 samples was significantly right skewed, (b) The algorithm identified the two-component skew-normal model as optimal, (c) When analyzed, the two-component model showed an absolute cut-off value of 0.316 and an indeterminate range with 80% certainty falling between 0.244 and 0.38.
Figure 2Mixture modelling analysis for the 2008 Targeted Child Survey in Vanuatu: (a) The distribution of data from the 187 samples was significantly right skewed, (b) The algorithm identified the one-component skew-normal model as optimal, indicating only one population in the sample set (negatives), (c) Implementation of the normal distribution identified a three-component model by BIC (Bayesian Information Criterion) best fit, (d) The cut-off values were set between the second and third distribution of data, giving an absolute cut-off value of ≥0.401 and a lower 80% threshold value of ≥0.365.
Figure 3Mapping of antibody prevalence estimates for 2005 and 2008 based on the Bm14 Filariasis CELISA: (a) Estimates of antibody prevalence for 2005 when using the original cut-off of ≥0.400, (b) Estimates of antibody prevalence for 2005 when using the absolute cut-off of ≥0.316, (c) Estimates of antibody prevalence for 2005 when using the 80% lower threshold cut-off of ≥0.244, (d) Estimates of antibody prevalence for 2008 when using the 80% lower threshold cut-off of ≥0.365.