Literature DB >> 30856485

Global phylodynamics of Echovirus 30 revealed differential behavior among viral lineages.

Cristina Lema1, Carolina Torres2, Sabine Van der Sanden3, Daniel Cisterna4, María Cecilia Freire4, Ricardo M Gómez5.   

Abstract

Echovirus 30 (E30) is an important causative agent of aseptic meningitis worldwide. Despite this, the global and regional dispersion patterns, especially in South America, are still largely unknown. We performed an in-depth analysis of global E30 population dynamics, by using the VP1 sequences of 79 strains isolated in Argentina, between 1998 and 2012, and 856 sequences from GenBank. Furthermore, the 3Dpol regions of 329 sequences were analyzed to study potential recombination events. E30 evolution was characterized by co-circulation and continuous replacement of lineages over time, where four lineages appear to circulate at present and another four lineages appear to have stopped circulating. Five lineages showed a global distribution, whereas three other lineages had a more restricted circulation pattern. Strains isolated in South America belong to lineages E and F. Analysis of the 3Dpol region of Argentinean strains indicated that recombination events occurred in both lineages.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Echovirus 30; Meningitis; Phylodynamics; Phylogeography; Recombination

Mesh：

Year:  2019        PMID： 30856485     DOI： 10.1016/j.virol.2019.02.012

Source DB:  PubMed          Journal:  Virology        ISSN： 0042-6822            Impact factor:   3.616


  13 in total

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2.  The Intrapopulation Genetic Diversity of RNA Virus May Influence the Sensitivity of Chlorine Disinfection.

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Journal:  Front Microbiol       Date:  2022-05-20       Impact factor: 6.064

3.  Molecular Epidemiology and Evolutionary Trajectory of Emerging Echovirus 30, Europe.

Authors:  Kimberley S M Benschop; Eeva K Broberg; Emma Hodcroft; Dennis Schmitz; Jan Albert; Anda Baicus; Jean-Luc Bailly; Gudrun Baldvinsdottir; Natasa Berginc; Soile Blomqvist; Sindy Böttcher; Mia Brytting; Erika Bujaki; Maria Cabrerizo; Cristina Celma; Ondrej Cinek; Eric C J Claas; Jeroen Cremer; Jonathan Dean; Jennifer L Dembinski; Iryna Demchyshyna; Sabine Diedrich; Susanne Dudman; Jake Dunning; Robert Dyrdak; Mary Emmanouil; Agnes Farkas; Cillian De Gascun; Guillaume Fournier; Irina Georgieva; Ruben Gonzalez-Sanz; Jolanda van Hooydonk-Elving; Anne J Jääskeläinen; Ruta Jancauskaite; Kathrin Keeren; Thea K Fischer; Sidsel Krokstad; Lubomira Nikolaeva-Glomb; Ludmila Novakova; Sofie E Midgley; Audrey Mirand; Richard Molenkamp; Ursula Morley; Joël Mossong; Svajune Muralyte; Jean-Luc Murk; Trung Nguyen; Svein A Nordbø; Riikka Österback; Suzan Pas; Laura Pellegrinelli; Vassiliki Pogka; Birgit Prochazka; Petra Rainetova; Marc Van Ranst; Lieuwe Roorda; Isabelle Schuffenecker; Rob Schuurman; Asya Stoyanova; Kate Templeton; Jaco J Verweij; Androniki Voulgari-Kokota; Tytti Vuorinen; Elke Wollants; Katja C Wolthers; Katherina Zakikhany; Richard Neher; Heli Harvala; Peter Simmonds
Journal:  Emerg Infect Dis       Date:  2021-06       Impact factor: 6.883

4.  Clinical, Laboratory, and Molecular Epidemiology of an Outbreak of Aseptic Meningitis Due to a Triple-Recombinant Echovirus in Ashburton, New Zealand.

Authors:  Meik Dilcher; Julia C Howard; Simon C Dalton; Trevor Anderson; Richard T Clinghan; Anja M Werno
Journal:  Viruses       Date:  2022-03-22       Impact factor: 5.048

5.  A Large-Scale Outbreak of Echovirus 30 in Gansu Province of China in 2015 and Its Phylodynamic Characterization.

Authors:  Jianhua Chen; Zhenzhi Han; Haizhuo Wu; Wenbo Xu; Deshan Yu; Yong Zhang
Journal:  Front Microbiol       Date:  2020-06-10       Impact factor: 5.640

6.  Environmental Surveillance through Next-Generation Sequencing to Unveil the Diversity of Human Enteroviruses beyond the Reported Clinical Cases.

Authors:  Andrés Lizasoain; Daiana Mir; Gisella Masachessi; Adrián Farías; Nélida Rodríguez-Osorio; Matías Victoria; Silvia Nates; Rodney Colina
Journal:  Viruses       Date:  2021-01-17       Impact factor: 5.048

7.  Viral Metagenomic Analysis of Cerebrospinal Fluid from Patients with Acute Central Nervous System Infections of Unknown Origin, Vietnam.

Authors:  Nguyen To Anh; Le Nguyen Truc Nhu; Nguyen Thi Thu Hong; Tran My Phuc; Pham Thi Thanh Tam; Dang Thao Huong; Tran Tuan Anh; Xutao Deng; Ho Dang Trung Nghia; Tran Thua Nguyen; Nguyen Van Hung; Nguyen Dac Thuan; Pham Thi Hong Phuong; Nguyen Van Vinh Chau; Stephen Baker; Eric Delwart; Guy Thwaites; Le Van Tan
Journal:  Emerg Infect Dis       Date:  2021-01       Impact factor: 6.883

8.  First evidence of enterovirus A71 and echovirus 30 in Uruguay and genetic relationship with strains circulating in the South American region.

Authors:  Andrés Lizasoain; Daiana Mir; Matías Salvo; Viviana Bortagaray; Gisela Masachessi; Adrián Farías; Nélida Rodríguez-Osorio; Silvia Nates; Matías Victoria; Rodney Colina
Journal:  PLoS One       Date:  2021-08-12       Impact factor: 3.240

9.  Genetic characterization of a novel recombinant echovirus 30 strain causing a regional epidemic of aseptic meningitis in Hokkaido, Japan, 2017.

Authors:  Masahiro Miyoshi; Akiko Goto; Rika Komagome; Hiroki Yamaguchi; Yuji Maruo; Masanori Nakanishi; Setsuko Ishida; Hideki Nagano; Takahisa Sugisawa; Motohiko Okano
Journal:  Arch Virol       Date:  2019-12-11       Impact factor: 2.574

Review 10.  World-Wide Prevalence and Genotype Distribution of Enteroviruses.

Authors:  Lieke Brouwer; Giulia Moreni; Katja C Wolthers; Dasja Pajkrt
Journal:  Viruses       Date:  2021-03-08       Impact factor: 5.048
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