| Literature DB >> 30853971 |
Fátima Lopes1,2, Fátima Torres3,4, Gabriela Soares5, Clara D van Karnebeek6,7, Cecília Martins8, Diana Antunes9, João Silva5, Lauren Muttucomaroe10, Luís Filipe Botelho11, Susana Sousa1,2, Paula Rendeiro3, Purificação Tavares3, Hilde Van Esch12, Evica Rajcan-Separovic13, Patrícia Maciel1,2.
Abstract
Microdeletions at 1q43-q44 have been described as resulting in a clinically recognizable phenotype of intellectual disability (ID), facial dysmorphisms and microcephaly (MIC). In contrast, the reciprocal microduplications of 1q43-q44 region have been less frequently reported and patients showed a variable phenotype, including macrocephaly. Reports of a large number of patients with copy number variations involving this region highlighted the AKT3 gene as a likely key player in head size anomalies. We report four novel patients with copy number variations in the 1q43-q44 region: one with a larger deletion (3.7Mb), two with smaller deletions affecting AKT3 and SDCCAG8 genes (0.16 and 0.18Mb) and one with a quadruplication (1Mb) that affects the entire AKT3 gene. All patients with deletions presented MIC without structural brain abnormalities, whereas the patient with quadruplication had macrocephaly, but his carrier father had normal head circumference. Our report also includes a comparison of phenotypes in cases with 1q43-q44 duplications to assist future genotype-phenotype correlations. Our observations implicate AKT3 as a contributor to ID/development delay (DD) and head size but raise doubts about its straightforward impact on the latter aspect of the phenotype in patients with 1q43-q44 deletion/duplication syndrome.Entities:
Keywords: 1q43-q44 CNVs; AKT3; SDCCAG8; ZBTB18; macrocephaly; microcephaly; phenotypic expressivity
Year: 2019 PMID: 30853971 PMCID: PMC6395382 DOI: 10.3389/fgene.2019.00058
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
Figure 1Facial features and brain imaging of the patients. (A) Patient 1 facial features, (B) patient 2 facial features, (C) Patient 3 facial features, and MRI brain imaging.
Figure 2Schematic representations of the CNVs found in the patients and overlap with the critical regions proposed by Ballif et al. (2012). A 2.2Mb genomic portion encompassing cytobands 1q43-q44 is shown. RefSeq genes present within the genomic region are shown in pink and the transcriptional direction is shown by the arrows. Shaded in gray is the proposed critical region for microcephaly (MIC) (affecting the AKT3 gene), in blue the critical region for corpus callosum anomalies (CCAs) (affecting the ZNF238 gene) and in green the critical region for seizures (SZR) (affecting the C1ORF199 gene). Individual red horizontal bars represent deletions and the green bar a quadruplication. In each CNV the corresponding patient is indicated.
Comparison of the clinical features of the patients in the current series with patients with AKT3 deletions described in the literature.
| CNV | CN Loss | Deletion | Deletion | Deletion | CN Gain (pure) | Quadruplication | |
| Clinical Overview | Gender | NR | ♀ | ♂ | ♂ | NR | ♂ |
| Consanguinity | NR | No | No | No | NR | No | |
| Birth | NR | 35 w (uneventful) | 41 w | 40 w | NR | To term | |
| Measurements at birth (heigh/weigth/OFC) | NR | NA | 49cm (P7)/3240g(P10)/33cm(P2) | 47cm(P1)/2710g(P2)/32.5cm(P1) | NR | NA | |
| Age at observation | NR | 9y | 12y | 3y (Evident MIC) | NR | Before 5y | |
| ID | Moderate to severe | Mild (IQ = 63) | Mild (IQ NA) | Mild (IQ = 61) | Moderate | Mild | |
| Weigth (centile) at observation | NR | P25 | Within normal range for age | NR | P50 | ||
| Heigth (centile) at observation | Short stature | P25 | P3 | Within normal range for age | NR | P20 | |
| Cranio-facial abnormalities | Head/ OFC (centile) | MIC | MIC ( | MIC ( | MIC ( | MAC | MAC |
| Structural brain abnormalities | Corpus callosum abnormalities (CCA) (agenesis/hypogenesis) | No | No | No | No | No | |
| Facial dysmorphisms | Round face, prominent forehead, flat nasal bridge, hypertelorism, epicanthal folds, malformed and low-set ears, hand and foot anomalies, | Mildly sploping forehead; large upper incisors | No major dysmorphisms | Upward palpebral fissures; retrognatia; poor hearing (conduction); dental caries | Prominent forehead, hypertelorism, wide nasal bridge, horizontal palpebral fissures, low set protruding ears. | NA | |
| Others | Behavior | No alterations | No alterations | Aggressivity | Aggressivity; Auto-mutilation hyperactivity | No alterations | No alterations |
| Seizures | Yes | No | No | No | No | No | |
| Hypotonia | Yes | No | No | No | Yes | No | |
| Genitalia | No alteration pattern | Normal | NA | Normal | No alteration pattern | Normal | |
| Heart | Minor heart conditions (usually resolve naturally) | NA | NA | Never evaluated | No | No | |
| Molecular findings | Inheritance | – | Paternal | – | Paternal | ||
| Confirmation | – | qPCR | qPCR | qPCR | – | NP | |
| Start (hg19) | – | 243,552,007 | 243,592,147 | 240,366,425 | – | 243,415,063 | |
| End (hg19) | – | 243,738,675 | 243,749,968 | 244,111,022 | - | 244,478,355 | |
| Size (Mb) | – | 0.18 | 0.16 | 3.7 | – | 1 | |
| Genes affected | – | – | |||||
Core phenotype of patients with 1q43–q44 duplications should be interpreted with care as there are very few cases reported.
Specific measure not available; CNV, copy number variants; NA, not available; OFC, occipitofrontal circumference; y, years; m, months; MIC, microcephaly; ID, intellectual disability; DD, developmental delay; NR, not representative; qPCR, quantitative PCR; ND, not determined; NP, not performed.