Literature DB >> 30851632

Metabolic kinetic modeling provides insight into complex biological questions, but hurdles remain.

Jonathan Strutz1, Jacob Martin1, Jennifer Greene1, Linda Broadbelt2, Keith Tyo3.   

Abstract

Metabolic models containing kinetic information can answer unique questions about cellular metabolism that are useful to metabolic engineering. Several kinetic modeling frameworks have recently been developed or improved. In addition, techniques for systematic identification of model structure, including regulatory interactions, have been reported. Each framework has advantages and limitations, which can make it difficult to choose the most appropriate framework. Common limitations are data availability and computational time, especially in large-scale modeling efforts. However, recently developed experimental techniques, parameter identification algorithms, as well as model reduction techniques help alleviate these computational bottlenecks. Opportunities for additional improvements may come from the rich literature in catalysis and chemical networks. In all, kinetic models are positioned to make significant impact in cellular engineering.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 30851632      PMCID: PMC6731160          DOI: 10.1016/j.copbio.2019.02.005

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  52 in total

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  7 in total

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5.  Integrating systemic and molecular levels to infer key drivers sustaining metabolic adaptations.

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7.  Metabolic Engineering Interventions for Sustainable 2,3-Butanediol Production in Gas-Fermenting Clostridium autoethanogenum.

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  7 in total

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