Literature DB >> 30850116

Physical Properties of Bacterial Outer Membrane Models: Neutron Reflectometry & Molecular Simulation.

Arwel V Hughes1, Dhilon S Patel2, Göran Widmalm3, Jeffery B Klauda4, Luke A Clifton5, Wonpil Im6.   

Abstract

The outer membrane (OM) of Gram-negative bacteria is an asymmetric bilayer having phospholipids in the inner leaflet and lipopolysaccharides in the outer leaflet. This unique asymmetry and the complex carbohydrates in lipopolysaccharides make it a daunting task to study the asymmetrical OM structure and dynamics, its interactions with OM proteins, and its roles in translocation of substrates, including antibiotics. In this study, we combine neutron reflectometry and molecular simulation to explore the physical properties of OM mimetics. There is excellent agreement between experiment and simulation, allowing experimental testing of the conclusions from simulations studies and also atomistic interpretation of the behavior of experimental model systems, such as the degree of lipid asymmetry, the lipid component (tail, head, and sugar) profiles along the bilayer normal, and lateral packing (i.e., average surface area per lipid). Therefore, the combination of both approaches provides a powerful new means to explore the biological and biophysical behavior of the bacterial OM.
Copyright © 2019 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2019        PMID: 30850116      PMCID: PMC6428969          DOI: 10.1016/j.bpj.2019.02.001

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

Review 1.  Molecular basis of bacterial outer membrane permeability revisited.

Authors:  Hiroshi Nikaido
Journal:  Microbiol Mol Biol Rev       Date:  2003-12       Impact factor: 11.056

2.  Fluctuations and destabilization of single phospholipid bilayers.

Authors:  T Charitat; S Lecuyer; G Fragneto
Journal:  Biointerphases       Date:  2008-06       Impact factor: 2.456

3.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

Review 4.  Modeling and simulation of bacterial outer membranes and interactions with membrane proteins.

Authors:  Dhilon S Patel; Yifei Qi; Wonpil Im
Journal:  Curr Opin Struct Biol       Date:  2017-01-31       Impact factor: 6.809

5.  Studying the effects of asymmetry on the bending rigidity of lipid membranes formed by microfluidics.

Authors:  K Karamdad; R V Law; J M Seddon; N J Brooks; O Ces
Journal:  Chem Commun (Camb)       Date:  2016-04-18       Impact factor: 6.222

6.  Lipopolysaccharide membrane building and simulation.

Authors:  Sunhwan Jo; Emilia L Wu; Danielle Stuhlsatz; Jeffery B Klauda; Alexander D MacKerell; Göran Widmalm; Wonpil Im
Journal:  Methods Mol Biol       Date:  2015

7.  Liquid crystalline bacterial outer membranes are critical for antibiotic susceptibility.

Authors:  Nicolò Paracini; Luke A Clifton; Maximilian W A Skoda; Jeremy H Lakey
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-23       Impact factor: 11.205

8.  Additive empirical force field for hexopyranose monosaccharides.

Authors:  Olgun Guvench; Shannon N Greene; Ganesh Kamath; John W Brady; Richard M Venable; Richard W Pastor; Alexander D Mackerell
Journal:  J Comput Chem       Date:  2008-11-30       Impact factor: 3.376

9.  Effect of divalent cation removal on the structure of gram-negative bacterial outer membrane models.

Authors:  Luke A Clifton; Maximilian W A Skoda; Anton P Le Brun; Filip Ciesielski; Ivan Kuzmenko; Stephen A Holt; Jeremy H Lakey
Journal:  Langmuir       Date:  2014-12-19       Impact factor: 3.882

10.  The Effect of Lipopolysaccharide Core Oligosaccharide Size on the Electrostatic Binding of Antimicrobial Proteins to Models of the Gram Negative Bacterial Outer Membrane.

Authors:  Luke A Clifton; Filip Ciesielski; Maximilian W A Skoda; Nicolò Paracini; Stephen A Holt; Jeremy H Lakey
Journal:  Langmuir       Date:  2016-04-01       Impact factor: 3.882

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  4 in total

Review 1.  Physical properties of the bacterial outer membrane.

Authors:  Jiawei Sun; Steven T Rutherford; Thomas J Silhavy; Kerwyn Casey Huang
Journal:  Nat Rev Microbiol       Date:  2021-11-03       Impact factor: 60.633

2.  Conformational Flexibility of the Protein Insertase BamA in the Native Asymmetric Bilayer Elucidated by ESR Spectroscopy.

Authors:  Aathira Gopinath; Benesh Joseph
Journal:  Angew Chem Int Ed Engl       Date:  2021-12-02       Impact factor: 16.823

Review 3.  Role of the lipid bilayer in outer membrane protein folding in Gram-negative bacteria.

Authors:  Jim E Horne; David J Brockwell; Sheena E Radford
Journal:  J Biol Chem       Date:  2020-06-04       Impact factor: 5.157

Review 4.  Model architectures for bacterial membranes.

Authors:  Ashley B Carey; Alex Ashenden; Ingo Köper
Journal:  Biophys Rev       Date:  2022-03-07
  4 in total

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