Literature DB >> 30849543

A five-miRNA signature predicts survival in gastric cancer using bioinformatics analysis.

Ziqiang Zhang1, Yuanqiang Dong2, Jin Hua3, Hongyuan Xue2, Jian Hu2, Tao Jiang2, Liubin Shi4, Jianjun Du5.   

Abstract

Abnormal expression of miRNAs is critical for gastric cancer progression. Here, we aimed to identify the differential expression of miRNAs in normal and cancerous gastric tissues and build a nomogram for effectively predicting the survival of patients with gastric cancer. We used high-throughput miRNA data in The Cancer Genome Atlas (TCGA) database for this study. The discriminative capabilities and predictive accuracy of the nomogram depended on the calibration curve and concordance index (C-index), and comparisons were made between the nomogram and current gastric cancer staging systems. Data of 87 patients collected from TCGA as bootstrap resamples were used to validate the results. In total, 129 miRNAs were differential expressed, of which, prognostic function was associated with five miRNAs using Kaplan-Meier analysis. Functional enrichment analysis showed that the target genes of these miRNAs were involved in various cancer-related pathways. Age, metastasis, lymph node status, T stage and the five-miRNA signature were selected as independent survival variables, in the nomogram for primary cohort multivariate analysis. According to the survival probability calibration curve, the nomogram predictions were consistent with the actual observations. The survival predicting nomogram showed a C-index of 0.72 (95% CI, 0.64 to 0.78), which was significantly higher than the C-index of the American Joint Committee on Cancer (AJCC) seventh edition (0.60; P < 0.001). We suggest that the proposed nomogram could be used to accurately predict the prognosis of patients with gastric cancer.
Copyright © 2019. Published by Elsevier B.V.

Entities:  

Keywords:  Gastric cancer; Nomogram; Staging system; Target gene; miRNA

Mesh:

Substances:

Year:  2019        PMID: 30849543     DOI: 10.1016/j.gene.2019.02.058

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  16 in total

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2.  MicroRNA-598 inhibits the growth and maintenance of gastric cancer stem-like cells by down-regulating RRS1.

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3.  Genomics Score Based on Genome-Wide Network Analysis for Prediction of Survival in Gastric Cancer: A Novel Prognostic Signature.

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Journal:  Front Genet       Date:  2020-08-06       Impact factor: 4.599

4.  CircRNA_0043691 sponges miR-873-3p to promote metastasis of gastric cancer.

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5.  Prognosis Value of microRNA-3677-3p in Lung Adenocarcinoma and Its Regulatory Effect on Tumor Progression.

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7.  Immune cell infiltration as a biomarker for the diagnosis and prognosis of digestive system cancer.

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Journal:  Cancer Sci       Date:  2019-11-02       Impact factor: 6.716

8.  HIF1α/miR-520a-3p/AKT1/mTOR Feedback Promotes The Proliferation And Glycolysis Of Gastric Cancer Cells.

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Journal:  Cancer Manag Res       Date:  2019-12-02       Impact factor: 3.989

9.  Immune-Related Nine-MicroRNA Signature for Predicting the Prognosis of Gastric Cancer.

Authors:  Jingxuan Xu; Jian Wen; Shuangquan Li; Xian Shen; Tao You; Yingpeng Huang; Chongyong Xu; Yaping Zhao
Journal:  Front Genet       Date:  2021-07-05       Impact factor: 4.599

10.  Identification of three predictors of gastric cancer progression and prognosis.

Authors:  Kai Huang; Shuhua Chen; Rongzhang Xie; Pengpeng Jiang; Changjun Yu; Jinmei Fang; Xingcun Liu; Fazhi Yu
Journal:  FEBS Open Bio       Date:  2020-08-18       Impact factor: 2.693

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