| Literature DB >> 30845904 |
Stéphanie Blaizot1, Sereina A Herzog2,3, Steven Abrams4, Heidi Theeten5, Amber Litzroth6, Niel Hens2,4.
Abstract
BACKGROUND: Our work was motivated by the need to, given serum availability and/or financial resources, decide on which samples to test in a serum bank for different pathogens. Simulation-based sample size calculations were performed to determine the age-based sampling structures and optimal allocation of a given number of samples for testing across various age groups best suited to estimate key epidemiological parameters (e.g., seroprevalence or force of infection) with acceptable precision levels in a cross-sectional seroprevalence survey.Entities:
Keywords: Allocation; Infectious diseases; Mathematical models; Precision; Sample size; Study design
Mesh:
Substances:
Year: 2019 PMID: 30845904 PMCID: PMC6407263 DOI: 10.1186/s12874-019-0692-1
Source DB: PubMed Journal: BMC Med Res Methodol ISSN: 1471-2288 Impact factor: 4.615
Summary of the models considered for each of the pathogens and the corresponding model parameter estimates using the observed serological survey data
| Serological data | Models | Estimates |
|---|---|---|
| Measles | Logistic model with piecewise constant prevalence |
|
| Mumps | Logistic model with piecewise constant prevalence |
|
| Rubella | Logistic model with piecewise constant prevalence |
|
| VZV | MSIR piecewise constant force of infection |
|
| Exponentially damped model for force of infection |
| |
| Parvovirus B19 | MSIR piecewise constant force of infection |
|
| Exponentially damped model for force of infection |
| |
| MSIR model with boosting and waning (MSIRWb-ext AW) |
VZV varicella-zoster virus, MSIR model Maternally-derived immunity-Susceptible-Infectious-Recovered model. : coefficient estimates (logit scale) within the age classes [1,2), [2,11), [11,16), [16,21), [21,31), and [31,65] years. : estimates of the force of infection within the age classes [1,2), [2,6), [6,12), [12,19), [19,31), and [31,65] years. : estimates of the three parameters describing the exponentially damped model. : estimated proportionality factor between the transmission and contact rates; and : estimated rates at which individuals moved from the high immunity state R to the low immunity state W for age group < 35 and ≥ 35 years respectively; φ: estimated proportionality factor between the boosting rate and the force of infection. See the Models section for more details
Fig. 1Schematic representation of the approach used in this paper
Fig. 2Measles, mumps, rubella serological data: mean, median, and 95% confidence interval for the overall seroprevalence over 500 simulations as a function of the total number of sampled individuals (N) using the logistic model with piecewise constant prevalence. Top left: Measles. Top right: Rubella. Bottom: Mumps. “True” overall seroprevalence is the estimated overall seroprevalence using the models on the observed serological survey data (with integer age values). The y-axes have different ranges of values for better legibility
Fig. 3Varicella-zoster virus serological data: mean, median, and 95% confidence interval for the overall seroprevalence (left) and overall force of infection (right) over 500 simulations as a function of the total number of sampled individuals (N) for the Maternally-derived immunity-Susceptible-Infectious-Recovered (MSIR) model with piecewise constant force of infection (top) and the exponentially damped model (bottom). “True” overall seroprevalence is the estimated overall seroprevalence using the models on the observed serological survey data (with integer age values)
Fig. 4Parvovirus B19 serological data: mean, median, and 95% confidence interval for the overall seroprevalence (left) and overall force of infection (right) over 500 simulations as a function of the total number of sampled individuals (N) for the Maternally-derived immunity-Susceptible-Infectious-Recovered (MSIR) model with piecewise constant force of infection (top), the exponentially damped model (middle), and the MSIR model allowing for age-specific waning of disease-acquired antibodies and boosting of low immunity (MSIRWb-ext AW) model (bottom). “True” overall seroprevalence is the estimated overall seroprevalence using the models on the observed serological data (with integer age values)
Fig. 5Optimal allocation (N = 3300) for various epidemiological parameters and by model (y-axis) among the six age groups (with lighter shades with increasing age group): [1,2), [2,6), [6,12), [12,19), [19,31), and [31,65] years, varicella-zoster virus (top) and parvovirus B19 (bottom) serological data. MSIR pcw: MSIR model with piecewise constant force of infection; Exp. damped: exponentially damped model; MSIRWb-ext AW: Maternally-derived immunity-Susceptible-Infectious-Recovered model allowing for age-specific waning of disease-acquired antibodies and boosting of low immunity; f.o.i: force of infection; Prev: prevalence