Literature DB >> 30844670

TaDa! Analysing cell type-specific chromatin in vivo with Targeted DamID.

Jelle van den Ameele1, Robert Krautz1, Andrea H Brand2.   

Abstract

The emergence of neuronal diversity during development of the nervous system relies on dynamic changes in the epigenetic landscape of neural stem cells and their progeny. Targeted DamID (TaDa) is proving invaluable in identifying the genome-wide binding sites of chromatin-associated proteins in vivo, without fixation, cell isolation, or immunoprecipitation. The simplicity and efficiency of the technique have led to an ever-expanding TaDa toolbox. These tools enable profiling of gene expression and chromatin accessibility, as well as the identification of the genome-wide binding sites of chromatin complexes, transcription factors and RNAs. Here, we review these new developments, with particular emphasis on the use of TaDa in studying neuronal specification.
Copyright © 2019. Published by Elsevier Ltd.

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Year:  2019        PMID: 30844670     DOI: 10.1016/j.conb.2019.01.021

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  4 in total

1.  Targeted molecular profiling of rare olfactory sensory neurons identifies fate, wiring, and functional determinants.

Authors:  J Roman Arguello; Liliane Abuin; Jan Armida; Kaan Mika; Phing Chian Chai; Richard Benton
Journal:  Elife       Date:  2021-03-05       Impact factor: 8.140

Review 2.  Epigenetic Regulation of Cell-Fate Changes That Determine Adult Liver Regeneration After Injury.

Authors:  Luigi Aloia
Journal:  Front Cell Dev Biol       Date:  2021-03-01

3.  In vivo targeted DamID identifies CHD8 genomic targets in fetal mouse brain.

Authors:  A Ayanna Wade; Jelle van den Ameele; Seth W Cheetham; Rebecca Yakob; Andrea H Brand; Alex S Nord
Journal:  iScience       Date:  2021-10-07

4.  A viral toolkit for recording transcription factor-DNA interactions in live mouse tissues.

Authors:  Alexander J Cammack; Arnav Moudgil; Jiayang Chen; Michael J Vasek; Mark Shabsovich; Katherine McCullough; Allen Yen; Tomas Lagunas; Susan E Maloney; June He; Xuhua Chen; Misha Hooda; Michael N Wilkinson; Timothy M Miller; Robi D Mitra; Joseph D Dougherty
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-16       Impact factor: 11.205

  4 in total

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