Literature DB >> 30843449

Ontological representation-oriented term normalization and standardization of the Research Domain Criteria.

Fang Li1, Guozheng Rao2, Jingcheng Du, Yang Xiang, Yaoyun Zhang, Salih Selek, Jane Elizabeth Hamilton, Hua Xu, Cui Tao1.   

Abstract

The Research Domain Criteria, launched by the National Institute of Mental Health, is a new dimensional and interdisciplinary research framework for mental disorders. The Research Domain Criteria matrix is its core part. Since an ontology has the strengths of supporting semantic inferencing and automatic data processing, we would like to transform the Research Domain Criteria matrix into an ontological structure. In terms of data normalization, which is the essential part of an ontology representation, the Research Domain Criteria elements (mainly in the Units of Analysis) have some limitations. In this article, we propose a series of solutions to improve data normalization of the Research Domain Criteria elements in the Units of Analysis, including leveraging standard terminologies (i.e. the Unified Medical Language System Metathesaurus), context-combining queries, and domain expertise. The evaluation results show the positive (Yes) percentage is more than 80 percent, indicating our work is favorably received by the mental health professionals, and we have formed a good data foundation for the Research Domain Criteria ontological representation in the future work.

Entities:  

Keywords:  Research Domain Criteria; Unified Medical Language System Metathesaurus; context query; data normalization; ontological representation

Mesh:

Year:  2019        PMID: 30843449      PMCID: PMC7863676          DOI: 10.1177/1460458219832059

Source DB:  PubMed          Journal:  Health Informatics J        ISSN: 1460-4582            Impact factor:   2.681


  17 in total

1.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

2.  Research domain criteria (RDoC): toward a new classification framework for research on mental disorders.

Authors:  Thomas Insel; Bruce Cuthbert; Marjorie Garvey; Robert Heinssen; Daniel S Pine; Kevin Quinn; Charles Sanislow; Philip Wang
Journal:  Am J Psychiatry       Date:  2010-07       Impact factor: 18.112

3.  Toward new approaches to psychotic disorders: the NIMH Research Domain Criteria project.

Authors:  Bruce N Cuthbert; Thomas R Insel
Journal:  Schizophr Bull       Date:  2010-10-07       Impact factor: 9.306

4.  Ontological Realism for the Research Domain Criteria for Mental Disorders.

Authors:  Werner Ceusters; Mark Jensen; Alexander D Diehl
Journal:  Stud Health Technol Inform       Date:  2017

Review 5.  Assessing the practice of biomedical ontology evaluation: Gaps and opportunities.

Authors:  Muhammad Amith; Zhe He; Jiang Bian; Juan Antonio Lossio-Ventura; Cui Tao
Journal:  J Biomed Inform       Date:  2018-02-17       Impact factor: 6.317

Review 6.  Implications of the Research Domain Criteria project for childhood anxiety and its disorders.

Authors:  Eli R Lebowitz; Dylan G Gee; Daniel S Pine; Wendy K Silverman
Journal:  Clin Psychol Rev       Date:  2018-01-31

Review 7.  Research domain criteria (RDoC) grows up: Strengthening neurodevelopment investigation within the RDoC framework.

Authors:  Vijay A Mittal; Lauren S Wakschlag
Journal:  J Affect Disord       Date:  2016-12-16       Impact factor: 4.839

8.  Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers.

Authors:  George Hripcsak; Jon D Duke; Nigam H Shah; Christian G Reich; Vojtech Huser; Martijn J Schuemie; Marc A Suchard; Rae Woong Park; Ian Chi Kei Wong; Peter R Rijnbeek; Johan van der Lei; Nicole Pratt; G Niklas Norén; Yu-Chuan Li; Paul E Stang; David Madigan; Patrick B Ryan
Journal:  Stud Health Technol Inform       Date:  2015

9.  Data Science in the Research Domain Criteria Era: Relevance of Machine Learning to the Study of Stress Pathology, Recovery, and Resilience.

Authors:  Isaac R Galatzer-Levy; Kelly Ruggles; Zhe Chen
Journal:  Chronic Stress (Thousand Oaks)       Date:  2018-01-10

10.  Toward the future of psychiatric diagnosis: the seven pillars of RDoC.

Authors:  Bruce N Cuthbert; Thomas R Insel
Journal:  BMC Med       Date:  2013-05-14       Impact factor: 8.775

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