Literature DB >> 30842871

Lectin engineering: the possible and the actual.

Jun Hirabayashi1, Ryoichi Arai2,3.   

Abstract

Lectins are a widespread group of sugar-binding proteins occurring in all types of organisms including animals, plants, bacteria, fungi and even viruses. According to a recent report, there are more than 50 lectin scaffolds (∼Pfam), for which three-dimensional structures are known and sugar-binding functions have been confirmed in the literature, which far exceeds our view in the twentieth century (Fujimoto et al. 2014 Methods Mol. Biol. 1200, 579-606 (doi:10.1007/978-1-4939-1292-6_46)). This fact suggests that new lectins will be discovered either by a conventional screening approach or just by chance. It is also expected that new lectin domains including those found in enzymes as carbohydrate-binding modules will be generated in the future through evolution, although this has never been attempted on an experimental level. Based on the current state of the art, various methods of lectin engineering are available, by which lectin specificity and/or stability of a known lectin scaffold can be improved. However, the above observation implies that any protein scaffold, including those that have never been described as lectins, may be modified to acquire a sugar-binding function. In this review, possible approaches to confer sugar-binding properties on synthetic proteins and peptides are described.

Entities:  

Keywords:  building block; carbohydrate-recognition domain; lectin engineering; molecular evolution; protein scaffold; ribosome display

Year:  2019        PMID: 30842871      PMCID: PMC6388023          DOI: 10.1098/rsfs.2018.0068

Source DB:  PubMed          Journal:  Interface Focus        ISSN: 2042-8898            Impact factor:   3.906


  66 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-20       Impact factor: 11.205

2.  (1)H, (13)C, and (15)N chemical shift assignment of the C-terminal 15 kDa domain of a novel galactose-binding protein from the earthworm Lumbricus terrestris.

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Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

Review 3.  Polymer principles and protein folding.

Authors:  K A Dill
Journal:  Protein Sci       Date:  1999-06       Impact factor: 6.725

4.  Structural basis of a fungal galectin from Agrocybe cylindracea for recognizing sialoconjugate.

Authors:  Mizuho Ban; Hye-Jin Yoon; Elif Demirkan; Shigeru Utsumi; Bunzo Mikami; Fumio Yagi
Journal:  J Mol Biol       Date:  2005-08-26       Impact factor: 5.469

5.  Progress in deciphering the information content of the 'glycome'--a crescendo in the closing years of the millennium.

Authors:  T Feizi
Journal:  Glycoconj J       Date:  2000 Jul-Sep       Impact factor: 2.916

Review 6.  A journey to the world of glycobiology.

Authors:  A Kobata
Journal:  Glycoconj J       Date:  2000 Jul-Sep       Impact factor: 2.916

7.  Tailoring a novel sialic acid-binding lectin from a ricin-B chain-like galactose-binding protein by natural evolution-mimicry.

Authors:  Rikio Yabe; Ryuichiro Suzuki; Atsushi Kuno; Zui Fujimoto; Yoshifumi Jigami; Jun Hirabayashi
Journal:  J Biochem       Date:  2007-01-18       Impact factor: 3.387

8.  DNA aptamers that bind to MUC1 tumour marker: design and characterization of MUC1-binding single-stranded DNA aptamers.

Authors:  C S M Ferreira; C S Matthews; S Missailidis
Journal:  Tumour Biol       Date:  2006-10-09

9.  Lectins: tools for the molecular understanding of the glycocode.

Authors:  Moira Ambrosi; Neil R Cameron; Benjamin G Davis
Journal:  Org Biomol Chem       Date:  2005-04-11       Impact factor: 3.876

10.  Functional proteins from a random-sequence library.

Authors:  A D Keefe; J W Szostak
Journal:  Nature       Date:  2001-04-05       Impact factor: 49.962

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  9 in total

1.  Functional reprogramming of Candida glabrata epithelial adhesins: the role of conserved and variable structural motifs in ligand binding.

Authors:  Daniel Hoffmann; Rike Diderrich; Viktoria Reithofer; Sabrina Friederichs; Michael Kock; Lars-Oliver Essen; Hans-Ulrich Mösch
Journal:  J Biol Chem       Date:  2020-07-15       Impact factor: 5.157

2.  Comprehensive analysis of lectin-glycan interactions reveals determinants of lectin specificity.

Authors:  Daniel E Mattox; Chris Bailey-Kellogg
Journal:  PLoS Comput Biol       Date:  2021-10-06       Impact factor: 4.475

3.  Heterogeneity of the GFP fitness landscape and data-driven protein design.

Authors:  Louisa Gonzalez Somermeyer; Aubin Fleiss; Alexander S Mishin; Nina G Bozhanova; Anna A Igolkina; Jens Meiler; Maria-Elisenda Alaball Pujol; Ekaterina V Putintseva; Karen S Sarkisyan; Fyodor A Kondrashov
Journal:  Elife       Date:  2022-05-05       Impact factor: 8.713

Review 4.  What is the Sugar Code?

Authors:  Hans-Joachim Gabius; Maré Cudic; Tammo Diercks; Herbert Kaltner; Jürgen Kopitz; Kevin H Mayo; Paul V Murphy; Stefan Oscarson; René Roy; Andreas Schedlbauer; Stefan Toegel; Antonio Romero
Journal:  Chembiochem       Date:  2021-09-22       Impact factor: 3.461

5.  Physical tuning of galectin-3 signaling.

Authors:  Shaheen A Farhadi; Renjie Liu; Matthew W Becker; Edward A Phelps; Gregory A Hudalla
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-11       Impact factor: 11.205

Review 6.  Strategies and Tactics for the Development of Selective Glycan-Binding Proteins.

Authors:  Elizabeth M Ward; Megan E Kizer; Barbara Imperiali
Journal:  ACS Chem Biol       Date:  2021-01-26       Impact factor: 4.634

Review 7.  Towards structure-focused glycoproteomics.

Authors:  Anastasia Chernykh; Rebeca Kawahara; Morten Thaysen-Andersen
Journal:  Biochem Soc Trans       Date:  2021-02-26       Impact factor: 5.407

8.  Phylogenetic, functional and structural characterization of a GH10 xylanase active at extreme conditions of temperature and alkalinity.

Authors:  David Talens-Perales; Elena Jiménez-Ortega; Paloma Sánchez-Torres; Julia Sanz-Aparicio; Julio Polaina
Journal:  Comput Struct Biotechnol J       Date:  2021-05-03       Impact factor: 7.271

9.  Self-Assembling Lectin Nano-Block Oligomers Enhance Binding Avidity to Glycans.

Authors:  Shin Irumagawa; Keiko Hiemori; Sayoko Saito; Hiroaki Tateno; Ryoichi Arai
Journal:  Int J Mol Sci       Date:  2022-01-08       Impact factor: 5.923

  9 in total

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