Literature DB >> 30842616

Measuring nanoscale diffusion dynamics in cellular membranes with super-resolution STED-FCS.

Erdinc Sezgin1, Falk Schneider2, Silvia Galiani2, Iztok Urbančič2,3, Dominic Waithe4,5, B Christoffer Lagerholm4, Christian Eggeling6,7,8,9.   

Abstract

Super-resolution microscopy techniques enable optical imaging in live cells with unprecedented spatial resolution. They unfortunately lack the temporal resolution required to directly investigate cellular dynamics at scales sufficient to measure molecular diffusion. These fast time scales are, on the other hand, routinely accessible by spectroscopic techniques such as fluorescence correlation spectroscopy (FCS). To enable the direct investigation of fast dynamics at the relevant spatial scales, FCS has been combined with super-resolution stimulated emission depletion (STED) microscopy. STED-FCS has been applied in point or scanning mode to reveal nanoscale diffusion behavior of molecules in live cells. In this protocol, we describe the technical details of performing point STED-FCS (pSTED-FCS) and scanning STED-FCS (sSTED-FCS) measurements, from calibration and sample preparation to data acquisition and analysis. We give particular emphasis to 2D diffusion dynamics in cellular membranes, using molecules tagged with organic fluorophores. These measurements can be accomplished within 4-6 h by those proficient in fluorescence imaging.

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Year:  2019        PMID: 30842616     DOI: 10.1038/s41596-019-0127-9

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  84 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

2.  Fluorescence correlation spectroscopy diffusion laws to probe the submicron cell membrane organization.

Authors:  Laure Wawrezinieck; Hervé Rigneault; Didier Marguet; Pierre-François Lenne
Journal:  Biophys J       Date:  2005-09-30       Impact factor: 4.033

3.  Dynamic molecular confinement in the plasma membrane by microdomains and the cytoskeleton meshwork.

Authors:  Pierre-François Lenne; Laure Wawrezinieck; Fabien Conchonaud; Olivier Wurtz; Annie Boned; Xiao-Jun Guo; Hervé Rigneault; Hai-Tao He; Didier Marguet
Journal:  EMBO J       Date:  2006-07-06       Impact factor: 11.598

4.  Fluorescence correlation spectroscopy in living cells.

Authors:  Sally A Kim; Katrin G Heinze; Petra Schwille
Journal:  Nat Methods       Date:  2007-11       Impact factor: 28.547

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Authors:  T A Klar; S W Hell
Journal:  Opt Lett       Date:  1999-07-15       Impact factor: 3.776

Review 6.  Fluorescence correlation spectroscopy: past, present, future.

Authors:  Elliot L Elson
Journal:  Biophys J       Date:  2011-12-20       Impact factor: 4.033

7.  Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy.

Authors:  S W Hell; J Wichmann
Journal:  Opt Lett       Date:  1994-06-01       Impact factor: 3.776

8.  Fluorescence correlation spectroscopy. II. An experimental realization.

Authors:  D Magde; E L Elson; W W Webb
Journal:  Biopolymers       Date:  1974-01       Impact factor: 2.505

Review 9.  Fluorescence nanoscopy in cell biology.

Authors:  Steffen J Sahl; Stefan W Hell; Stefan Jakobs
Journal:  Nat Rev Mol Cell Biol       Date:  2017-09-06       Impact factor: 94.444

Review 10.  Super-resolution optical microscopy for studying membrane structure and dynamics.

Authors:  Erdinc Sezgin
Journal:  J Phys Condens Matter       Date:  2017-05-08       Impact factor: 2.333

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  25 in total

1.  Advances in Confocal Microscopy and Selected Applications.

Authors:  W Matt Reilly; Christopher J Obara
Journal:  Methods Mol Biol       Date:  2021

Review 2.  Lipid Rafts: Controversies Resolved, Mysteries Remain.

Authors:  Ilya Levental; Kandice R Levental; Frederick A Heberle
Journal:  Trends Cell Biol       Date:  2020-02-20       Impact factor: 20.808

3.  Resolving the Three-Dimensional Rotational and Translational Dynamics of Single Molecules Using Radially and Azimuthally Polarized Fluorescence.

Authors:  Oumeng Zhang; Weiyan Zhou; Jin Lu; Tingting Wu; Matthew D Lew
Journal:  Nano Lett       Date:  2022-01-24       Impact factor: 11.189

Review 4.  Structural and functional consequences of reversible lipid asymmetry in living membranes.

Authors:  Milka Doktorova; Jessica L Symons; Ilya Levental
Journal:  Nat Chem Biol       Date:  2020-11-16       Impact factor: 15.040

5.  Using FCS to accurately measure protein concentration in the presence of noise and photobleaching.

Authors:  Lili Zhang; Carmina Perez-Romero; Nathalie Dostatni; Cécile Fradin
Journal:  Biophys J       Date:  2021-07-07       Impact factor: 3.699

6.  In Vivo Single-Molecule Detection of Nanoparticles for Multiphoton Fluorescence Correlation Spectroscopy to Quantify Cerebral Blood Flow.

Authors:  Xu Fu; Pradoldej Sompol; Jason A Brandon; Christopher M Norris; Thomas Wilkop; Lance A Johnson; Christopher I Richards
Journal:  Nano Lett       Date:  2020-07-08       Impact factor: 12.262

7.  Background Reduction in STED-FCS Using a Bivortex Phase Mask.

Authors:  Aurélien Barbotin; Iztok Urbančič; Silvia Galiani; Christian Eggeling; Martin Booth
Journal:  ACS Photonics       Date:  2020-06-04       Impact factor: 7.529

8.  Nanoscale dynamics of cholesterol in the cell membrane.

Authors:  Kerstin Pinkwart; Falk Schneider; Martyna Lukoseviciute; Tatjana Sauka-Spengler; Edward Lyman; Christian Eggeling; Erdinc Sezgin
Journal:  J Biol Chem       Date:  2019-07-03       Impact factor: 5.157

9.  Impact of Nanoscale Hindrances on the Relationship between Lipid Packing and Diffusion in Model Membranes.

Authors:  Daniel Beckers; Dunja Urbancic; Erdinc Sezgin
Journal:  J Phys Chem B       Date:  2020-02-18       Impact factor: 2.991

10.  z-STED Imaging and Spectroscopy to Investigate Nanoscale Membrane Structure and Dynamics.

Authors:  Aurélien Barbotin; Iztok Urbančič; Silvia Galiani; Christian Eggeling; Martin Booth; Erdinc Sezgin
Journal:  Biophys J       Date:  2020-04-16       Impact factor: 4.033

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