Literature DB >> 30840526

High-density extracellular probes reveal dendritic backpropagation and facilitate neuron classification.

Xiaoxuan Jia1, Joshua H Siegle1, Corbett Bennett1, Samuel D Gale1, Daniel J Denman1, Christof Koch1, Shawn R Olsen1.   

Abstract

Different neuron types serve distinct roles in neural processing. Extracellular electrical recordings are extensively used to study brain function but are typically blind to cell identity. Morphoelectrical properties of neurons measured on spatially dense electrode arrays have the potential to distinguish neuron types. We used high-density silicon probes to record from cortical and subcortical regions of the mouse brain. Extracellular waveforms of each neuron were detected across many channels and showed distinct spatiotemporal profiles among brain regions. Classification of neurons by brain region was improved with multichannel compared with single-channel waveforms. In visual cortex, unsupervised clustering identified the canonical regular-spiking (RS) and fast-spiking (FS) classes but also indicated a subclass of RS units with unidirectional backpropagating action potentials (BAPs). Moreover, BAPs were observed in many hippocampal RS cells. Overall, waveform analysis of spikes from high-density probes aids neuron identification and can reveal dendritic backpropagation. NEW & NOTEWORTHY It is challenging to identify neuron types with extracellular electrophysiology in vivo. We show that spatiotemporal action potentials measured on high-density electrode arrays can capture cell type-specific morphoelectrical properties, allowing classification of neurons across brain structures and within the cortex. Moreover, backpropagating action potentials are reliably detected in vivo from subpopulations of cortical and hippocampal neurons. Together, these results enhance the utility of dense extracellular electrophysiology for cell-type interrogation of brain network function.

Entities:  

Keywords:  BAPs; Neuropixels; backpropagating action potentials; classification; extracellular waveform; in vivo

Mesh:

Substances:

Year:  2019        PMID: 30840526     DOI: 10.1152/jn.00680.2018

Source DB:  PubMed          Journal:  J Neurophysiol        ISSN: 0022-3077            Impact factor:   2.714


  11 in total

1.  Cellular Classes in the Human Brain Revealed In Vivo by Heartbeat-Related Modulation of the Extracellular Action Potential Waveform.

Authors:  Clayton P Mosher; Yina Wei; Jan Kamiński; Anirban Nandi; Adam N Mamelak; Costas A Anastassiou; Ueli Rutishauser
Journal:  Cell Rep       Date:  2020-03-10       Impact factor: 9.423

2.  Survey of spiking in the mouse visual system reveals functional hierarchy.

Authors:  Joshua H Siegle; Xiaoxuan Jia; Séverine Durand; Sam Gale; Corbett Bennett; Nile Graddis; Greggory Heller; Tamina K Ramirez; Hannah Choi; Jennifer A Luviano; Peter A Groblewski; Ruweida Ahmed; Anton Arkhipov; Amy Bernard; Yazan N Billeh; Dillan Brown; Michael A Buice; Nicolas Cain; Shiella Caldejon; Linzy Casal; Andrew Cho; Maggie Chvilicek; Timothy C Cox; Kael Dai; Daniel J Denman; Saskia E J de Vries; Roald Dietzman; Luke Esposito; Colin Farrell; David Feng; John Galbraith; Marina Garrett; Emily C Gelfand; Nicole Hancock; Julie A Harris; Robert Howard; Brian Hu; Ross Hytnen; Ramakrishnan Iyer; Erika Jessett; Katelyn Johnson; India Kato; Justin Kiggins; Sophie Lambert; Jerome Lecoq; Peter Ledochowitsch; Jung Hoon Lee; Arielle Leon; Yang Li; Elizabeth Liang; Fuhui Long; Kyla Mace; Jose Melchior; Daniel Millman; Tyler Mollenkopf; Chelsea Nayan; Lydia Ng; Kiet Ngo; Thuyahn Nguyen; Philip R Nicovich; Kat North; Gabriel Koch Ocker; Doug Ollerenshaw; Michael Oliver; Marius Pachitariu; Jed Perkins; Melissa Reding; David Reid; Miranda Robertson; Kara Ronellenfitch; Sam Seid; Cliff Slaughterbeck; Michelle Stoecklin; David Sullivan; Ben Sutton; Jackie Swapp; Carol Thompson; Kristen Turner; Wayne Wakeman; Jennifer D Whitesell; Derric Williams; Ali Williford; Rob Young; Hongkui Zeng; Sarah Naylor; John W Phillips; R Clay Reid; Stefan Mihalas; Shawn R Olsen; Christof Koch
Journal:  Nature       Date:  2021-01-20       Impact factor: 49.962

3.  CellExplorer: A framework for visualizing and characterizing single neurons.

Authors:  Peter C Petersen; Joshua H Siegle; Nicholas A Steinmetz; Sara Mahallati; György Buzsáki
Journal:  Neuron       Date:  2021-09-29       Impact factor: 17.173

Review 4.  Growing evidence for separate neural mechanisms for attention and consciousness.

Authors:  Alexander Maier; Naotsugu Tsuchiya
Journal:  Atten Percept Psychophys       Date:  2020-10-09       Impact factor: 2.199

5.  Microscale Physiological Events on the Human Cortical Surface.

Authors:  Angelique C Paulk; Jimmy C Yang; Daniel R Cleary; Daniel J Soper; Milan Halgren; Alexandra R O'Donnell; Sang Heon Lee; Mehran Ganji; Yun Goo Ro; Hongseok Oh; Lorraine Hossain; Jihwan Lee; Youngbin Tchoe; Nicholas Rogers; Kivilcim Kiliç; Sang Baek Ryu; Seung Woo Lee; John Hermiz; Vikash Gilja; István Ulbert; Daniel Fabó; Thomas Thesen; Werner K Doyle; Orrin Devinsky; Joseph R Madsen; Donald L Schomer; Emad N Eskandar; Jong Woo Lee; Douglas Maus; Anna Devor; Shelley I Fried; Pamela S Jones; Brian V Nahed; Sharona Ben-Haim; Sarah K Bick; Robert Mark Richardson; Ahmed M Raslan; Dominic A Siler; Daniel P Cahill; Ziv M Williams; G Rees Cosgrove; Shadi A Dayeh; Sydney S Cash
Journal:  Cereb Cortex       Date:  2021-07-05       Impact factor: 4.861

6.  Large-scale neural recordings with single neuron resolution using Neuropixels probes in human cortex.

Authors:  Ziv M Williams; Sydney S Cash; Angelique C Paulk; Yoav Kfir; Arjun R Khanna; Martina L Mustroph; Eric M Trautmann; Dan J Soper; Sergey D Stavisky; Marleen Welkenhuysen; Barundeb Dutta; Krishna V Shenoy; Leigh R Hochberg; R Mark Richardson
Journal:  Nat Neurosci       Date:  2022-01-31       Impact factor: 28.771

7.  A Multimodal Multi-Shank Fluorescence Neural Probe for Cell-Type-Specific Electrophysiology in Multiple Regions across a Neural Circuit.

Authors:  Namsun Chou; Hyogeun Shin; Kanghwan Kim; Uikyu Chae; Minsu Jang; Ui-Jin Jeong; Kyeong-Seob Hwang; Bumjun Yi; Seung Eun Lee; Jiwan Woo; Yakdol Cho; Changhyuk Lee; Bradley J Baker; Soo-Jin Oh; Min-Ho Nam; Nakwon Choi; Il-Joo Cho
Journal:  Adv Sci (Weinh)       Date:  2021-11-19       Impact factor: 16.806

8.  Dataset of cortical activity recorded with high spatial resolution from anesthetized rats.

Authors:  Csaba Horváth; Lili Fanni Tóth; István Ulbert; Richárd Fiáth
Journal:  Sci Data       Date:  2021-07-15       Impact factor: 6.444

9.  Dendritic calcium signals in rhesus macaque motor cortex drive an optical brain-computer interface.

Authors:  Eric M Trautmann; Daniel J O'Shea; Xulu Sun; James H Marshel; Ailey Crow; Brian Hsueh; Sam Vesuna; Lucas Cofer; Gergő Bohner; Will Allen; Isaac Kauvar; Sean Quirin; Matthew MacDougall; Yuzhi Chen; Matthew P Whitmire; Charu Ramakrishnan; Maneesh Sahani; Eyal Seidemann; Stephen I Ryu; Karl Deisseroth; Krishna V Shenoy
Journal:  Nat Commun       Date:  2021-06-17       Impact factor: 14.919

10.  Dentate spikes and external control of hippocampal function.

Authors:  Dino Dvorak; Ain Chung; Eun Hye Park; André Antonio Fenton
Journal:  Cell Rep       Date:  2021-08-03       Impact factor: 9.423

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