Literature DB >> 30838648

Genomic landscape of inverted urothelial papilloma and urothelial papilloma of the bladder.

Sumit Isharwal1, Wenhuo Hu2, Judy Sarungbam3, Ying-Bei Chen4, Anuradha Gopalan4, Samson W Fine4, Satish K Tickoo4, Sahussapont J Sirintrapun4, Sana Jadallah5, Florence L Loo5, Eugene J Pietzak6, Eugene K Cha6, Bernard H Bochner6, Michael F Berger4,7, Gopa Iyer2,8, David B Solit2,7,8, Victor E Reuter4, Hikmat Al-Ahmadie4.   

Abstract

Inverted urothelial papilloma (IUP) and urothelial papilloma (UP) are rare urothelial neoplasms that typically follow a benign clinical course. Oncogenic mutations in FGFR3, HRAS, and the TERT promoter have been reported in these entities but no comprehensive molecular analysis has been performed. We sought to characterize the genomic landscape of IUP and UP using whole-exome and targeted next-generation sequencing. In IUP, 10 of 11 tumors harbored oncogenic hotspot mutations in HRAS and the remaining tumor had an oncogenic KRAS mutation. None of the IUP tumors harbored TERT promoter or FGFR3 mutations. In UP, 8 of 11 tumors had oncogenic KRAS mutations and two had oncogenic HRAS mutations. One UP tumor had oncogenic mutations in FGFR3, PIK3CA, and the TERT promoter, and arose in a patient with recurrent non-invasive papillary urothelial carcinomas. In contrast to urothelial carcinoma, the APOBEC mutational signature was not present in any IUP and UP tumors, and oncogenic alterations in chromatin remodeling genes were uncommon in both IUP and UP. The current study suggests that IUP and UP are driven primarily by RAS pathway activation and lack the more common genomic features of urothelial cancers.
Copyright © 2019 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd. Copyright © 2019 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.

Entities:  

Keywords:  RAS pathway; genomics; inverted urothelial papilloma; urothelial carcinoma; urothelial papilloma

Mesh:

Substances:

Year:  2019        PMID: 30838648      PMCID: PMC6579631          DOI: 10.1002/path.5261

Source DB:  PubMed          Journal:  J Pathol        ISSN: 0022-3417            Impact factor:   7.996


  24 in total

1.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

Review 2.  Senescence and serration: a new twist to an old tale.

Authors:  P Minoo; J R Jass
Journal:  J Pathol       Date:  2006-10       Impact factor: 7.996

Review 3.  Inverted papilloma of the bladder: a review and an analysis of the recent literature of 365 patients.

Authors:  Stefano Picozzi; Stefano Casellato; Giorgio Bozzini; Dario Ratti; Alberto Macchi; Barbara Rubino; Gianna Pace; Luca Carmignani
Journal:  Urol Oncol       Date:  2012-04-19       Impact factor: 3.498

4.  Frequent FGFR3 mutations in urothelial papilloma.

Authors:  Bas W G van Rhijn; Rodolfo Montironi; Ellen C Zwarthoff; Adriaan C Jöbsis; Theo H van der Kwast
Journal:  J Pathol       Date:  2002-10       Impact factor: 7.996

Review 5.  Non-invasive papillary urothelial neoplasms: the 2004 WHO/ISUP classification system.

Authors:  Hiroshi Miyamoto; Jeremy S Miller; Daniel A Fajardo; Thomas K Lee; George J Netto; Jonathan I Epstein
Journal:  Pathol Int       Date:  2010-01       Impact factor: 2.534

6.  Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads.

Authors:  Kai Ye; Marcel H Schulz; Quan Long; Rolf Apweiler; Zemin Ning
Journal:  Bioinformatics       Date:  2009-06-26       Impact factor: 6.937

7.  FGFR3 and TP53 mutation analysis in inverted urothelial papilloma: incidence and etiological considerations.

Authors:  Sarah Lott; Mingsheng Wang; Shaobo Zhang; Gregory T MacLennan; Antonio Lopez-Beltran; Rodolfo Montironi; Ming-Tse Sung; Puay-Hoon Tan; Liang Cheng
Journal:  Mod Pathol       Date:  2009-03-13       Impact factor: 7.842

8.  Low frequency of molecular changes and tumor recurrence in inverted papillomas of the urinary tract.

Authors:  Matthias Eiber; Johanna M M van Oers; Ellen C Zwarthoff; Theo H van der Kwast; Oehler Ulrich; Burkhard Helpap; Stephan Stoerkel; Hagen Blaszyk; John Cheville; Guido Sauter; Peter J Wild; Robert Stoehr; Ferdinand Hofstaedter; Arndt Hartmann
Journal:  Am J Surg Pathol       Date:  2007-06       Impact factor: 6.394

9.  A framework for variation discovery and genotyping using next-generation DNA sequencing data.

Authors:  Mark A DePristo; Eric Banks; Ryan Poplin; Kiran V Garimella; Jared R Maguire; Christopher Hartl; Anthony A Philippakis; Guillermo del Angel; Manuel A Rivas; Matt Hanna; Aaron McKenna; Tim J Fennell; Andrew M Kernytsky; Andrey Y Sivachenko; Kristian Cibulskis; Stacey B Gabriel; David Altshuler; Mark J Daly
Journal:  Nat Genet       Date:  2011-04-10       Impact factor: 38.330

10.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

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  10 in total

1.  Inverted urothelial papilloma and urothelial carcinoma with inverted growth are histologically and molecularly distinct entities.

Authors:  Nima Almassi; Eugene J Pietzak; Judy Sarungbam; Satish K Tickoo; Victor E Reuter; David B Solit; Hikmat A Al-Ahmadie
Journal:  J Pathol       Date:  2020-02-28       Impact factor: 9.883

Review 2.  PIK3CA Gene Mutations in Solid Malignancies: Association with Clinicopathological Parameters and Prognosis.

Authors:  Ali Alqahtani; Hazem S K Ayesh; Hafez Halawani
Journal:  Cancers (Basel)       Date:  2019-12-30       Impact factor: 6.639

Review 3.  [Molecular pathology of urogenital tumors : Recommendations from the 2019 International Society of Urological Pathology (ISUP) Consensus Conference].

Authors:  Oliver Hommerding; Yves Allory; Pedram Argani; Tarek A Bismar; Lukas Bubendorf; Sofía Canete-Portillo; Alcides Chaux; Ying-Bei Chen; Liang Cheng; Antonio L Cubilla; Lars Egevad; Anthony J Gill; David J Grignon; Arndt Hartmann; Ondrej Hes; Muhammad T Idrees; Chia-Sui Kao; Margaret A Knowles; Leendert H J Looijenga; Tamara L Lotan; Colin C Pritchard; Mark A Rubin; Scott A Tomlins; Theodorus H Van der Kwast; Elsa F Velazquez; Joshua I Warrick; Sean R Williamson; Glen Kristiansen
Journal:  Pathologe       Date:  2021-01-04       Impact factor: 1.011

4.  TERT Promoter Mutations in Keratinizing and Nonkeratinizing Squamous Metaplasia of the Urinary Tract.

Authors:  Alexander S Taylor; Brandon Newell; Arul M Chinnaiyan; Khaled S Hafez; Alon Z Weizer; Daniel E Spratt; Anne P Cameron; Hikmat A Al-Ahmadie; Sounak Gupta; Jeffrey S Montgomery; Bryan L Betz; Noah Brown; Rohit Mehra
Journal:  Eur Urol Open Sci       Date:  2022-01-03

5.  Proteomic-Based Machine Learning Analysis Reveals PYGB as a Novel Immunohistochemical Biomarker to Distinguish Inverted Urothelial Papilloma From Low-Grade Papillary Urothelial Carcinoma With Inverted Growth.

Authors:  Minsun Jung; Cheol Lee; Dohyun Han; Kwangsoo Kim; Sunah Yang; Ilias P Nikas; Kyung Chul Moon; Hyeyoon Kim; Min Ji Song; Bohyun Kim; Hyebin Lee; Han Suk Ryu
Journal:  Front Oncol       Date:  2022-03-24       Impact factor: 6.244

6.  Telomerase reverse transcriptase (TERT) promoter mutations in primary adenocarcinoma of bladder and urothelial carcinoma with glandular differentiation: pathogenesis and diagnostic implications.

Authors:  Liang Cheng; Antonio Lopez-Beltran; Mingsheng Wang; Rodolfo Montironi; Hristos Z Kaimakliotis; Shaobo Zhang
Journal:  Mod Pathol       Date:  2021-03-05       Impact factor: 7.842

7.  Educational Case: Bladder Urothelial Cell Carcinoma TNM Stage, Prognosis and Management.

Authors:  Jake Quarles; Joshua Richmond; Vinushree Swamy; Jyotsna Pandey
Journal:  Acad Pathol       Date:  2021-06-29

Review 8.  Molecular Pathology of Urothelial Carcinoma.

Authors:  Hikmat Al-Ahmadie; George J Netto
Journal:  Surg Pathol Clin       Date:  2021-09

9.  Bladder Urothelial Carcinoma in a Child: Case Report and Review of Literature.

Authors:  Marian Hanae Oda; Danilo Vicente Dos Santos; Adria Karina Farias; Leilane de Oliveira; Bruno Pinheiro Falcão; Nicholas J Ahn; Antônio Carlos Amarante; Graziele Moraes Losso; Andre Ivan Bradley Dos Santos Dias; Miguel Angelo Agulham; Camila Girardi Fachin
Journal:  Front Pediatr       Date:  2019-09-20       Impact factor: 3.418

10.  Frequent KRAS and HRAS mutations in squamous cell papillomas of the head and neck.

Authors:  Eiichi Sasaki; Katsuhiro Masago; Shiro Fujita; Nobuhiro Hanai; Yasushi Yatabe
Journal:  J Pathol Clin Res       Date:  2020-01-20
  10 in total

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