| Literature DB >> 30837839 |
Benjamin Spurny1, Eva Heckova2, Rene Seiger1, Philipp Moser2, Manfred Klöbl1, Thomas Vanicek1, Marie Spies1, Wolfgang Bogner2, Rupert Lanzenberger1.
Abstract
Purpose: Advanced analysis methods for multi-voxel magnetic resonance spectroscopy (MRS) are crucial for neurotransmitter quantification, especially for neurotransmitters showing different distributions across tissue types. So far, only a handful of studies have used region of interest (ROI)-based labeling approaches for multi-voxel MRS data. Hence, this study aims to provide an automated ROI-based labeling tool for 3D-multi-voxel MRS data.Entities:
Keywords: FreeSurfer; GABA; MRS; automated labeling; glutamate; multi-voxel
Year: 2019 PMID: 30837839 PMCID: PMC6382749 DOI: 10.3389/fnmol.2019.00028
Source DB: PubMed Journal: Front Mol Neurosci ISSN: 1662-5099 Impact factor: 5.639
Figure 1Illustration of automated region of interest (ROI)-specific magnetic resonance spectroscopy (MRS) analysis: structural T1-weighted MR images (A) are automatically segmented in cortical and subcortical areas using FreeSurfer (B). Masks of individual ROIs are extracted (C). Multi-voxel MRS data is resampled to the resolution of the MR images (D,E) and coregistered with individual masks (F), resulting in distributions within single ROIs (G).
Figure 2Exemplary in vivo proton MR spectra obtained with the gamma-aminobutyric acid (GABA)-editing MEGA-LASER 3D MRSI sequence from selected voxels of each ROI. The LCModel fit of metabolites in the EDIT-OFF and DIFF (difference spectrum; subtraction of EDIT-ON and EDIT-OFF) spectrum is shown, respectively.
Metabolite ratio mean, standard deviation (Stdev) and cramér-Rao lower bounds (CRLBs) values for each region and labeling method.
| ROI | Automated labeling | Rater 1 | Rater 2 | Voxel | |
|---|---|---|---|---|---|
| Hippocampus Left | Mean ± Stdev GABA+/tNAA | 0.15 ± 0.01 | 0.15 ± 0.01 | 0.15 ± 0.01 | 0.15 ± 0.03 |
| CRLB GABA+ | 15.04 | 15.18 | 15.19 | 15.81 | |
| Mean ± Stdev Glx/tNAA | 0.96 ± 0.11 | 0.96 ± 0.11 | 0.95 ± 0.10 | 1.13 ± 0.32 | |
| CRLB Glx | 7.66 | 7.48 | 7.37 | 7.37 | |
| Hippocampus Right | Mean ± Stdev GABA+/tNAA | 0.16 ± 0.02 | 0.16 ± 0.02 | 0.16 ± 0.02 | 0.15 ± 0.05 |
| CRLB GABA+ | 15.27 | 15.08 | 15.15 | 18.02 | |
| Mean ± Stdev Glx/tNAA | 0.93 ± 0.11 | 0.94 ± 0.13 | 0.93 ± 0.12 | 1.08 ± 0.23 | |
| CRLB Glx | 8.62 | 8.47 | 8.44 | 9.06 | |
| Putamen Left | Mean ± Stdev GABA+/tNAA | 0.17 ± 0.02 | 0.17 ± 0.02 | 0.17 ± 0.02 | 0.18 ± 0.03 |
| CRLB GABA+ | 12.45 | 12.39 | 12.49 | 11.58 | |
| Mean ± Stdev Glx/tNAA | 1.01 ± 0.09 | 1.03 ± 0.10 | 1.02 ± 0.10 | 1.11 ± 0.18 | |
| CRLB Glx | 7.30 | 7.36 | 7.46 | 6.03 | |
| Mean ± Stdev tNAA/tCr | 1.28 ± 0.11 | 1.25 ± 0.12 | 1.23 ± 0.11 | 1.42 ± 0.53 | |
| Putamen Right | Mean ± Stdev GABA+/tNAA | 0.17 ± 0.02 | 0.17 ± 0.02 | 0.17 ± 0.02 | 0.15 ± 0.06 |
| CRLB GABA+ | 13.53 | 13.93 | 13.84 | 17.82 | |
| Mean ± Stdev Glx/tNAA | 0.99 ± 0.14 | 1.00 ± 0.15 | 0.99 ± 0.13 | 1.03 ± 0.53 | |
| CRLB Glx | 9.62 | 9.88 | 10.05 | 11.67 | |
| Mean ± Stdev tNAA/tCr | 1.27 ± 0.25 | 1.23 ± 0.28 | 1.22 ± 0.28 | 1.18 ± 0.39 | |
| Pallidum Left | Mean ± Stdev GABA+/tNAA | 0.18 ± 0.02 | 0.18 ± 0.02 | 0.18 ± 0.02 | 0.18 ± 0.03 |
| CRLB GABA+ | 11.78 | 11.64 | 11.95 | 11.46 | |
| Mean ± Stdev Glx/tNAA | 0.93 ± 0.08 | 0.93 ± 0.09 | 0.91 ± 0.09 | 0.92 ± 0.17 | |
| CRLB Glx | 7.61 | 7.84 | 8.73 | 7.91 | |
| Mean ± Stdev tNAA/tCr | 1.23 ± 0.19 | 1.26 ± 0.10 | 1.27 ± 0.10 | 1.35 ± 0.21 | |
| Pallidum Right | Mean ± Stdev GABA+/tNAA | 0.17 ± 0.02 | 0.17 ± 0.02 | 0.17 ± 0.02 | 0.18 ± 0.05 |
| CRLB GABA+ | 14.07 | 14.50 | 14.26 | 13.89 | |
| Mean ± Stdev Glx/tNAA | 0.94 ± 0.12 | 0.98 ± 0.15 | 0.96 ± 0.12 | 1.00 ± 0.41 | |
| CRLB Glx | 9.14 | 9.39 | 9.33 | 9.54 | |
| Mean ± Stdev tNAA/tCr | 1.40 ± 0.15 | 1.38 ± 0.11 | 1.39 ± 0.15 | 1.64 ± 0.37 |
Figure 3Bland-Altman plot with limits of agreement indicating 1.96*SD (dotted lines) for mean GABA+/total N-acetylaspartate (tNAA) ratios within all regions showing the agreement between two labeling methods for automated labeling vs. rater 1 (A), automated labeling vs. rater 2 (B), rater 1 vs. rater 2 (C) and automated labeling vs. selected voxels (D). RPC, reproducibility coefficient and % of values; CV, coefficient of variation (SD of mean values in %).
Figure 4Bland-Altman plot with limits of agreement indicating 1.96*SD (dotted lines) for mean Glx/tNAA ratios within all regions showing the agreement between two labeling methods for automated labeling vs. rater 1 (A), automated labeling vs. rater 2 (B), rater 1 vs. rater 2 (C) and automated labeling vs. selected voxels (D). RPC, reproducibility coefficient and % of values; CV, coefficient of variation (SD of mean values in %).
Figure 5Graphical illustration of intra-class correlation coefficient (ICC) values for each region and metabolite ratio [ICC with upper and lower bound (error bars)] between labeling methods for GABA+/tNAA (A), Glx/tNAA (B) and tNAA/tCr (C).