Literature DB >> 30835194

Genome-based classification of two halotolerant extreme acidophiles, Acidihalobacter prosperus V6 (=DSM 14174 =JCM 32253) and 'Acidihalobacter ferrooxidans' V8 (=DSM 14175 =JCM 32254) as two new species, Acidihalobacter aeolianus sp. nov. and Acidihalobacter ferrooxydans sp. nov., respectively.

Himel N Khaleque1,2, Carolina González3, Anna H Kaksonen2, Naomi J Boxall2, David S Holmes3, Elizabeth L J Watkin1.   

Abstract

Phylogenomic analysis of recently released high-quality draft genome sequences of the halotolerant acidophiles, Acidihalobacter prosperus V6 (=DSM 14174=JCM 32253) and 'Acidihalobacter ferrooxidans' V8 (=DSM 14175=JCM 32254), was undertaken in order to clarify their taxonomic relationship. Sequence based phylogenomic approaches included 16S rRNA gene phylogeny, multi-gene phylogeny from the concatenated alignment of nine selected housekeeping genes and multiprotein phylogeny using clusters of orthologous groups of proteins from ribosomal protein families as well as those from complete sets of markers based on concatenated alignments of universal protein families. Non-sequence based approaches for species circumscription were based on analyses of average nucleotide identity, which was further reinforced by the correlation indices of tetra-nucleotide signatures as well as genome-to-genome distance (digital DNA-DNA hybridization) calculations. The different approaches undertaken in this study for species tree reconstruction resulted in a tree that was phylogenetically congruent, revealing that both micro-organisms are members of separate species of the genus Acidihalobacter. In accordance, it is proposed that A. prosperus V6T (=DSM 14174 T=JCM 32253 T) be formally classified as Acidihalobacter aeolianus sp. nov., and 'Acidihalobacter ferrooxidans' V8T (=DSM 14175 T=JCM 32254 T) as Acidihalobacter ferrooxydans sp. nov., and that both represent the type strains of their respective species.

Entities:  

Keywords:  Acidophile; halotolerant; iron and sulfur oxidising

Mesh:

Substances:

Year:  2019        PMID: 30835194     DOI: 10.1099/ijsem.0.003313

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  6 in total

1.  Water Activities of Acid Brine Lakes Approach the Limit for Life.

Authors:  Kathleen C Benison; William K O'Neill; David Blain; John E Hallsworth
Journal:  Astrobiology       Date:  2021-04-05       Impact factor: 4.045

2.  Unlocking Survival Mechanisms for Metal and Oxidative Stress in the Extremely Acidophilic, Halotolerant Acidihalobacter Genus.

Authors:  Himel Nahreen Khaleque; Homayoun Fathollazadeh; Carolina González; Raihan Shafique; Anna H Kaksonen; David S Holmes; Elizabeth L J Watkin
Journal:  Genes (Basel)       Date:  2020-11-24       Impact factor: 4.096

3.  A Large-Scale Genome-Based Survey of Acidophilic Bacteria Suggests That Genome Streamlining Is an Adaption for Life at Low pH.

Authors:  Diego Cortez; Gonzalo Neira; Carolina González; Eva Vergara; David S Holmes
Journal:  Front Microbiol       Date:  2022-03-21       Impact factor: 5.640

4.  Integrative Genomics Sheds Light on Evolutionary Forces Shaping the Acidithiobacillia Class Acidophilic Lifestyle.

Authors:  Carolina González-Rosales; Eva Vergara; Mark Dopson; Jorge H Valdés; David S Holmes
Journal:  Front Microbiol       Date:  2022-02-15       Impact factor: 5.640

5.  Genome-based classification of Acidihalobacter prosperus F5 (=DSM 105917=JCM 32255) as Acidihalobacter yilgarnensis sp. nov.

Authors:  Himel Nahreen Khaleque; Carolina González; D Barrie Johnson; Anna H Kaksonen; David S Holmes; Elizabeth L J Watkin
Journal:  Int J Syst Evol Microbiol       Date:  2020-12       Impact factor: 2.747

6.  Examining the Osmotic Response of Acidihalobacter aeolianus after Exposure to Salt Stress.

Authors:  Melissa K Corbett; Liam Anstiss; April Gifford; Ross M Graham; Elizabeth L J Watkin
Journal:  Microorganisms       Date:  2021-12-23
  6 in total

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