Literature DB >> 30833792

A protein-interaction network of interferon-stimulated genes extends the innate immune system landscape.

Philipp Hubel1, Christian Urban2, Valter Bergant2, William M Schneider3, Barbara Knauer1, Alexey Stukalov1,2, Pietro Scaturro1,2, Angelika Mann1, Linda Brunotte4,5, Heinrich H Hoffmann3, John W Schoggins3,6, Martin Schwemmle7, Matthias Mann8, Charles M Rice3, Andreas Pichlmair9,10,11.   

Abstract

Interferon-stimulated genes (ISGs) form the backbone of the innate immune system and are important for limiting intra- and intercellular viral replication and spread. We conducted a mass-spectrometry-based survey to understand the fundamental organization of the innate immune system and to explore the molecular functions of individual ISGs. We identified interactions between 104 ISGs and 1,401 cellular binding partners engaging in 2,734 high-confidence interactions. 90% of these interactions are unreported so far, and our survey therefore illuminates a far wider activity spectrum of ISGs than is currently known. Integration of the resulting ISG-interaction network with published datasets and functional studies allowed us to identify regulators of immunity and processes related to the immune system. Given the extraordinary robustness of the innate immune system, this ISG network may serve as a blueprint for therapeutic targeting of cellular systems to efficiently fight viral infections.

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Year:  2019        PMID: 30833792     DOI: 10.1038/s41590-019-0323-3

Source DB:  PubMed          Journal:  Nat Immunol        ISSN: 1529-2908            Impact factor:   31.250


  53 in total

Review 1.  Cell-autonomous immunity by IFN-induced GBPs in animals and plants.

Authors:  Shuai Huang; Qingcai Meng; Agnieszka Maminska; John D MacMicking
Journal:  Curr Opin Immunol       Date:  2019-06-06       Impact factor: 7.486

2.  Type I interferon remodels lysosome function and modifies intestinal epithelial defense.

Authors:  Hailong Zhang; Abdelrahim Zoued; Xu Liu; Brandon Sit; Matthew K Waldor
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-10       Impact factor: 11.205

3.  Initial HCV infection of adult hepatocytes triggers a temporally structured transcriptional program containing diverse pro- and anti-viral elements.

Authors:  Birthe Tegtmeyer; Gabrielle Vieyres; Daniel Todt; Chris Lauber; Corinne Ginkel; Michael Engelmann; Maike Herrmann; Christian K Pfaller; Florian W R Vondran; Ruth Broering; Ehsan Vafadarnejad; Antoine-Emmanuel Saliba; Christina Puff; Wolfgang Baumgärtner; Csaba Miskey; Zoltán Ivics; Eike Steinmann; Thomas Pietschmann; Richard J P Brown
Journal:  J Virol       Date:  2021-03-03       Impact factor: 5.103

4.  The NSs Protein Encoded by the Virulent Strain of Rift Valley Fever Virus Targets the Expression of Abl2 and the Actin Cytoskeleton of the Host, Affecting Cell Mobility, Cell Shape, and Cell-Cell Adhesion.

Authors:  Aline Bamia; Vasco Marcato; Magali Boissière; Zeyni Mansuroglu; Carole Tamietti; Mattea Romani; Dominique Simon; Guanfang Tian; Florence Niedergang; Jean-Jacques Panthier; Marie Flamand; Sylvie Souès; Eliette Bonnefoy
Journal:  J Virol       Date:  2020-12-09       Impact factor: 5.103

Review 5.  NCBP3: A Multifaceted Adaptive Regulator of Gene Expression.

Authors:  Xavier Rambout; Lynne E Maquat
Journal:  Trends Biochem Sci       Date:  2020-10-05       Impact factor: 13.807

6.  ETV7 limits antiviral gene expression and control of influenza viruses.

Authors:  Heather M Froggatt; Alfred T Harding; Ryan R Chaparian; Nicholas S Heaton
Journal:  Sci Signal       Date:  2021-07-13       Impact factor: 8.192

7.  Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV.

Authors:  Alexey Stukalov; Virginie Girault; Vincent Grass; Ozge Karayel; Valter Bergant; Christian Urban; Darya A Haas; Yiqi Huang; Lila Oubraham; Anqi Wang; M Sabri Hamad; Antonio Piras; Fynn M Hansen; Maria C Tanzer; Igor Paron; Luca Zinzula; Thomas Engleitner; Maria Reinecke; Teresa M Lavacca; Rosina Ehmann; Roman Wölfel; Jörg Jores; Bernhard Kuster; Ulrike Protzer; Roland Rad; John Ziebuhr; Volker Thiel; Pietro Scaturro; Matthias Mann; Andreas Pichlmair
Journal:  Nature       Date:  2021-04-12       Impact factor: 49.962

8.  Exposure to Gestational Diabetes Enriches Immune-Related Pathways in the Transcriptome and Methylome of Human Amniocytes.

Authors:  Sara E Pinney; Apoorva Joshi; Victoria Yin; So Won Min; Cetewayo Rashid; David E Condon; Paul Zhipang Wang
Journal:  J Clin Endocrinol Metab       Date:  2020-10-01       Impact factor: 5.958

9.  The Zinc Finger Antiviral Protein ZAP Restricts Human Cytomegalovirus and Selectively Binds and Destabilizes Viral UL4/UL5 Transcripts.

Authors:  Ana Cristina Gonzalez-Perez; Markus Stempel; Emanuel Wyler; Christian Urban; Antonio Piras; Thomas Hennig; Sabina Ganskih; Yuanjie Wei; Albert Heim; Markus Landthaler; Andreas Pichlmair; Lars Dölken; Mathias Munschauer; Florian Erhard; Melanie M Brinkmann
Journal:  mBio       Date:  2021-05-04       Impact factor: 7.867

10.  ELAVL1 primarily couples mRNA stability with the 3' UTRs of interferon-stimulated genes.

Authors:  Katherine Rothamel; Sarah Arcos; Byungil Kim; Clara Reasoner; Samantha Lisy; Neelanjan Mukherjee; Manuel Ascano
Journal:  Cell Rep       Date:  2021-05-25       Impact factor: 9.423

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