Differentiation of Tilletia Species by rep-PCR Genomic Fingerprinting.

The potential of repetitive-sequence-based polymerase chain reaction (rep-PCR) fingerprinting of fungal genomic DNA as a rapid and simple alternative to random amplified polymorphic DNA (RAPD) analysis in the study of phylogenetic relationships, and also as a diagnostic method, was investigated with species of Tilletia. DNA primers (BOX, ERIC, and REP) corresponding to conserved repetitive element motifs, originally described in prokaryotes, were used to generate genomic fingerprints of T. indica, T. walkeri, T. controversa, T. laevis, T. tritici, T. goloskokovii, T. barclayana, and members of the T. fusca complex. Computer-assisted analysis of the database of combined fingerprints clearly distinguished each taxon and indicated phylo-genetic relationships consistent with previously reported RAPD analyses. There were three main clusters with isolates showing 35 to 40% similarity. Group 1 included T. indica and T. walkeri; group 2 included members of the T. fusca complex, as well as T. controversa, T. laevis, T. tritici, and T. goloskokovii; and group 3 included only T. barclayana. If, as is likely, the conserved repetitive element motifs on which this technique is based are widespread or universal in fungal species, rep-PCR shows strong potential, not only as a simple generic taxonomic tool, but also as a diagnostic method.