| Literature DB >> 30828348 |
Martin Hetu1, Konstantia Koutouki2, Yann Joly1.
Abstract
Genomic medicine applications have the potential to considerably improve health care in developing countries in the coming years. However, if developing countries do not improve their capacity for research and development (R&D) in the field, they might be left out of the genomics revolution. Large-scale and widely accessible databases for storing and analyzing genomic data are crucial tools for the advancement of genomic medicine. Building developing countries' capacity in genomics is accordingly closely linked to their involvement in international human genomics research initiatives. The purpose of this paper is to conduct a pilot study on the impact of international open science genomics projects on capacity building in R&D in developing countries. Using indicators we developed in previous work to measure the performance of international open science genomics projects, we analyse the policies and practices of four key projects in the field: the International HapMap Project, the Human Heredity and Health in Africa Initiative, the Malaria Genomic Epidemiology Network and the Structural Genomics Consortium. The results show that these projects play an important role in genomics capacity building in developing countries, but play a more limited role with regard to the potential redistribution of the benefits of research to the populations of these countries. We further suggest concrete initiatives that could facilitate the involvement of researchers from developing countries in the international genomics research community and accelerate capacity building in the developing world.Entities:
Keywords: capacity building; database; developing countries; genomic medicine; genomics; international scientific community; open science; research and development
Year: 2019 PMID: 30828348 PMCID: PMC6384230 DOI: 10.3389/fgene.2019.00095
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
International open science genomics projects.
| Years of operation | 2002–2016 | 2010–Present | 2005–Present | 2003–Present |
| Objective | Map the most common human genetic variations and describe their nature, location in the DNA sequence and distribution within a given population and between populations in different places in the world. | Facilitate genomics research and research on environmental determinants of diseases in Africa in order to improve the health of African populations. | Identify the genetic specificities associated with the transmission of malaria and with resistance to malaria developed by humans. | Identify the three-dimensional structure of human proteins and parasite proteins on a large-scale and in a cost-effective manner in order to facilitate research and development of new medications. |
| Main countries with research institutions involved in the project | Canada, China, Japan, Nigeria, United Kingdom, and United States | Benin, Botswana, Ethiopia, Ghana, Mali, Nigeria, South Africa, Uganda, United States, and Zimbabwe | Angola, Bangladesh, Brazil, Burkina Faso, Cambodia, Cameroon, China, Colombia, Democratic Republic of the Congo, Equatorial Guinea, Gabon, Ghana, Guinea, Guinea Bissau, India, Indonesia, Ivory Coast, Kenya, Laos, Madagascar, Malaysia, Malawi, Mali, Myanmar, Nigeria, Papua New Guinea, Peru, Senegal, Sudan, Tanzania, Thailand, Uganda, United Kingdom, and Vietnam | Brazil, Canada, Germany, Sweden, United Kingdom, and United States |
| Main funding organizations | Chinese Academy of Sciences, Chinese Ministry of Science and Technology, George S. and Dolores Dore Eccles Foundation, Genome Canada, Genome Quebec, Hong Kong Innovation and Technology Commission, Japanese Ministry of Education, Culture, Sports, Science and Technology, Natural Science Foundation of China, SNP Consortium, United States National Institutes of Health, University Grants Committee of Hong Kong, W.M. Keck Foundation and Wellcome Trust | United States National Institutes of Health and Wellcome Trust | Bill & Melinda Gates Foundation, Foundation for the National Institutes of Health, United Kingdom Medical Research Council and Wellcome Trust | AbbVie, Bayer Pharma AG, Boehringer Ingelheim, Canada Foundation for Innovation, Eshelman Institute for Innovation, Genome Canada, Innovative Medicines Initiative, Janssen, Merck KGaA, MSD, Novartis Pharma AG, Ontario Ministry of Research, Innovation and Science, Pfizer, Sao Paulo Research Foundation, Takeda and Wellcome Trust |
| Website |
Indicators: Measuring international open science genomics projects' performance in fostering genomic capacity building in the developing world.
| Indicator no. 1 | The data collected in the framework of the project include data collected from populations in developing countries. |
| Indicator no. 2 | Part of the project concerns a disease significantly affecting the health of populations in developing countries. |
| Indicator no. 3 | Researchers in developing countries are involved in the project. |
| Indicator no. 4 | Researchers in developing countries have access to the data collected in the context of the project. |
| Indicator no. 5 | The data collected in the context of the project are used by researchers in developing countries. |
| Indicator no. 6 | The project contributes to the development of research infrastructures in developing countries. |
| Indicator no. 7 | Decision-making positions are assigned to researchers and managers in developing countries. |
| Indicator no. 8 | The project includes training opportunities accessible and relevant to researchers/students in developing countries. |
| Indicator no. 9 | The project's intellectual property management policies are favorable to developing countries. |
A first look at the impact of international open science genomics projects on capacity building in the developing world.
| Indicator no. 1: The data collected in the framework of the project include data collected from populations in developing countries | Seventy-eight percent (78%) of the data were collected from populations in developing countries. | One hundred percent (100%) of the data were collected from populations in developing countries. | One hundred percent (100%) of the data were collected from populations in developing countries. | The source of the data is not systematically specified. |
| Indicator no. 2: Part of the project concerns a disease significantly affecting the health of populations in developing countries | The data are relevant for research on diseases affecting the population of developing countries. | The data are relevant for research on diseases affecting the population of developing countries. | The data are relevant for research on diseases affecting the population of developing countries. | The data are relevant for research on diseases affecting the population of developing countries. |
| Indicator no. 3: Researchers in developing countries are involved in the project | Twenty-eight percent (28%) of the research centers involved were located in developing countries. | The majority of the research centers involved were located in developing countries. | Fifty-one percent (51%) of the research centers involved were located in developing countries. | Seventeen percent (17%) of the main research centers involved were located in developing countries. |
| Indicator no. 4: Researchers in developing countries have access to the data collected in the context of the project | Data are placed in the public domain and are accessible to all. | Data are accessible to all after the expiration of temporary measures favoring the researchers who collected the data. | Data are accessible to all after the expiration of temporary measures favoring the researchers who collected the data. | Data are placed in the public domain and are accessible to all. |
| Indicator no. 5: The data collected in the context of the project are used by researchers in developing countries | Twenty-seven percent (27%) of the 2,057 published studies using data from the project involved researchers from developing countries. | One hundred percent (100%) of the three published studies using data from the project involved researchers from developing countries. | Eighty-nine percent (89%) of the nine published studies using data from the project involved researchers from developing countries. | Twenty percent (20%) of the five published studies using data from the project involved researchers from developing countries. |
| Indicator no. 6: The project contributes to the development of research infrastructures in developing countries | No specific program addressing the development of research infrastructures. | The project contributed to the establishment of genomics research centers and a bioinformatics network. | Impact on the development of research infrastructures in developing countries cannot be clearly identified. | Impact on the development of research infrastructures in developing countries cannot be clearly identified. |
| Indicator no. 7: Decision-making positions are assigned to researchers and managers in developing countries | None of the project's decision-making positions were attributed to researchers from developing countries. | Forty-four percent (44%) of the project's decision-making positions were attributed to researchers from developing countries. | Sixty-three percent (63%) of the project's decision-making positions were attributed to researchers from developing countries. | One percent (1%) of the project's decision-making positions was attributed to researchers from developing countries. |
| Indicator no. 8: The project includes training opportunities accessible and relevant to researchers/students in developing countries | No specific training program accessible to researchers/students in developing countries. | All of the research sub-projects must involve a training component and training workshops are frequently organized. | The project involves training scholarships and training workshops are frequently organized. | The project involves training scholarships, but they are not accessible to researchers/students in developing countries. Training workshops are frequently organized. |
| Indicator no. 9: The project's intellectual property management policies are favorable to developing countries | Discoveries resulting from research using the project's data may be patented. No policy favoring the redistribution of benefits from patented discoveries to populations of developing countries. | Discoveries resulting from research using the project's data may be patented. No policy favoring the redistribution of benefits from patented discoveries to populations of developing countries. | Discoveries resulting from research using the project's data may not be patented, except if IP protection is necessary for the transfer of technology to developing countries. Benefits from patented discoveries must be redistributed to populations of developing countries. | Discoveries resulting from research using the project's data may be patented. No policy favoring the redistribution of benefits from patented discoveries to populations of developing countries. |