| Literature DB >> 30828319 |
Domenico Savio1,2, Philipp Stadler3,4, Georg H Reischer5,6, Katalin Demeter3,6, Rita B Linke2,6, Alfred P Blaschke2,7, Robert L Mach8, Alexander K T Kirschner2,9, Hermann Stadler10, Andreas H Farnleitner1,2,6.
Abstract
Alpine karst aquifers are important groundwater resources for the provision of drinking water all around the world. Yet, due to difficult accessibility and long-standing methodological limitations, the microbiology of these systems has long been understudied. The aim of the present study was to investigate the structure and dynamics of bacterial communities in spring water of an alpine limestone karst aquifer (LKAS2) under different hydrological conditions (base vs. event flow). The study was based on high-throughput 16S rRNA gene amplicon sequencing, study design and sample selection were guided by hydrology and pollution microbiology data. Spanning more than 27 months, our analyses revealed a taxonomically highly stable bacterial community, comprising high proportions of yet uncultivated bacteria in the suspended bacterial community fraction. Only the three candidate phyla Parcubacteria (OD1), Gracilibacteria (GN02), Doudnabacteria (SM2F11) together with Proteobacteria and Bacteroidetes contributed between 70.0 and 88.4% of total reads throughout the investigation period. A core-community of 300 OTUs consistently contributed between 37.6 and 56.3% of total reads, further supporting the hypothesis of a high temporal stability in the bacterial community in the spring water. Nonetheless, a detectable response in the bacterial community structure of the spring water was discernible during a high-discharge event. Sequence reads affiliated to the class Flavobacteriia clearly increased from a mean proportion of 2.3% during baseflow to a maximum of 12.7% during the early phase of the studied high-discharge event, suggesting direct impacts from changing hydrological conditions on the bacterial community structure in the spring water. This was further supported by an increase in species richness (Chao1) at higher discharge. The combination of these observations allowed the identification and characterization of three different discharge classes (Q1-Q3). In conclusion, we found a taxonomically stable bacterial community prevailing in spring waters from an alpine karst aquifer over the entire study period of more than 2 years. Clear response to changing discharge conditions could be detected for particular bacterial groups, whereas the most responsive group - bacteria affiliated to the class of Flavobacteriia - might harbor potential as a valuable natural indicator of "system disturbances" in karst aquifers.Entities:
Keywords: base flow; drinking water resource characterization and protection; high-discharge event; high-throughput 16S rRNA gene amplicon sequencing; spring water microbiome
Year: 2019 PMID: 30828319 PMCID: PMC6385617 DOI: 10.3389/fmicb.2019.00028
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
FIGURE 1Study design. Timeline showing the sampling dates (black and black-yellow stars) along the discharge graph (blue) as well as the measured Spectral Absorption Coefficient at λ = 254 nm (SAC254; green) for (A) the entire sampling period, and (B) the investigated high-discharge event in August 2005. Panel (B) additionally depicts total cells counts (TCC) as well as concentrations for the standard fecal pollution indicator E. coli. Data on E. coli concentrations, discharge and SAC254 were previously published by Reischer et al. (2008).
Summary table of physical, chemical and microbiological indicator parameters.
| BASEFLOW ( | EVENT ( | Reference | Ratios EV/BF | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| pos | NA | mean | median | Range | pos | NA | mean | median | Range | mdEV/mdBF | maxEV/meanBF | ||||||
| Discharge [L s−1] | 14 | – | 2 | 3055 | 3376 | 1173–5513 | 1393 | 16 | – | 0 | 15213 | 15226 | 9527–20336 | 2921 | 4.5 | 6.7 | |
| Conductivity [μS cm−1] | 16 | – | 0 | 204 | 198 | 186–233 | 13 | 16 | – | 0 | 195 | 196 | 191–203 | 3 | 1.0 | 1.0 | |
| Temp [°C] | 16 | – | 0 | 5.4 | 5.4 | 5.23–5.7 | 0.2 | 16 | – | 0 | 5.2 | 5.2 | 5.17–5.33 | 0.1 | 1.0 | 1.0 | |
| pH | 16 | – | 0 | 8.0 | 8.1 | 7.5–8.2 | 0.2 | 16 | – | 0 | 7.7 | 7.5 | 7.5–8.1 | 0.3 | 0.9 | 1.0 | |
| SAC254 [abs m−1] | 16 | – | 0 | 1.0 | 0.7 | 0.22–2.07 | 0.6 | 16 | – | 0 | 6.3 | 6.8 | 1.84–9.8 | 2.7 | 9.3 | 9.8 | |
| Turbidity [FNU] | 16 | – | 0 | 0.2 | 0.1 | 0.03–0.5 | 0.1 | 16 | – | 0 | 1.7 | 1.7 | 0.52–2.95 | 0.8 | 17.1 | 19.7 | |
| 16 | 9 | 0 | 14.3 | 3.0 | 0–90 | 27 | 16 | 16 | 0 | 521.6 | 275.0 | 45–1850 | 543 | 91.7 | 129.8 | ||
| BacR [×103 ME/L] | 16 | 14 | 0 | 1.0 | 0.1 | 0–8.4 | 2.3 | 16 | 16 | 0 | 149.0 | 48.9 | 2.2–820.0 | 221.7 | 350.2 | 840.2 | |
| TCC [×103 cells/mL] | 9 | 9 | 7 | 36.2 | 34.5 | 26–53 | 8 | 16 | 16 | 0 | 104.8 | 81.5 | 66–219 | 49 | 2.4 | 6.0 | |
FIGURE 2Non-metric multidimensional scaling (NMDS)-plot of community dissimilarities based on the Bray–Curtis dissimilarity index. Stress value of the NMDS was 0.10. Circles depict bacterial communities occurring under baseflow conditions (BF), triangles represent bacterial communities observed under high-discharge event conditions (EV).
FIGURE 3Taxonomic community composition in all investigated samples separated by discharge class (Q1–Q3) and sorted by time of sampling from left to right. Barstacks depict the relative abundance of the 20 most abundant bacterial classes according to SILVA taxonomy (v123; Yilmaz et al., 2014) as well as all additional classes summarized under “Others.” Brackets contain the respective phylum the bacterial class is affiliated to. Dates signed with a “∗” in the lower timeline (EV-window) indicate baseflow samples (BF07 and BF08).
FIGURE 4Relative read proportion assigned to OTUs categorized based on their first occurrence in any one sample in chronological order (cf. Supplementary Figure 2). Left boxplot: most abundant OTUs that showed > 100 reads per sample and appeared in at least 27 out of 32 samples (n = 300); Center boxplot: less abundant OTUs that showed their first occurrence in a baseflow-sample (BF01–BF16); Right boxplot: less abundant OTUs that first occurred in an event sample (EV01–EV16).
FIGURE 5Time-course of “estimated Flavobacteriia concentrations” (pink) along with physical and chemical parameters during the investigated high-discharge event. Spectral Absorption Coefficient at λ = 254 nm (SAC254).