Literature DB >> 30818949

Transfer-Learning-Based Coarse-Graining Method for Simple Fluids: Toward Deep Inverse Liquid-State Theory.

Alireza Moradzadeh1, Narayana R Aluru1.   

Abstract

Machine learning is an attractive paradigm to circumvent difficulties associated with the development and optimization of force-field parameters. In this study, a deep neural network (DNN) is used to study the inverse problem of the liquid-state theory, in particular, to obtain the relation between the radial distribution function (RDF) and the Lennard-Jones (LJ) potential parameters at various thermodynamic states. Using molecular dynamics (MD), many observables, including RDF, are determined once the interatomic potential is specified. However, the inverse problem (parametrization of the potential for a specific RDF) is not straightforward. Here we present a framework integrating DNN with big data from 1.5 TB of MD trajectories with a cumulative simulation time of 52 μs for 26 000 distinct systems to predict LJ potential parameters. Our results show that DNN is successful not only in the parametrization of the atomic LJ liquids but also in parametrizing the LJ potential for coarse-grained models of simple multiatom molecules.

Entities:  

Year:  2019        PMID: 30818949     DOI: 10.1021/acs.jpclett.8b03872

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  4 in total

Review 1.  Bottom-up Coarse-Graining: Principles and Perspectives.

Authors:  Jaehyeok Jin; Alexander J Pak; Aleksander E P Durumeric; Timothy D Loose; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2022-09-07       Impact factor: 6.578

2.  Application of Transfer Learning and Feature Fusion Algorithms to Improve the Identification and Prediction Efficiency of Premature Ovarian Failure.

Authors:  Yuanyuan Zhang; Jing Hou; Qiaoyun Wang; Aiqin Hou; Yanni Liu
Journal:  J Healthc Eng       Date:  2022-03-27       Impact factor: 2.682

3.  Analysis of Sports Video Intelligent Classification Technology Based on Neural Network Algorithm and Transfer Learning.

Authors:  Han Guangyu
Journal:  Comput Intell Neurosci       Date:  2022-03-24

Review 4.  "Dividing and Conquering" and "Caching" in Molecular Modeling.

Authors:  Xiaoyong Cao; Pu Tian
Journal:  Int J Mol Sci       Date:  2021-05-10       Impact factor: 5.923

  4 in total

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