Literature DB >> 30817889

Allosteric Modulator Discovery: From Serendipity to Structure-Based Design.

Shaoyong Lu1,2, Xinheng He1, Duan Ni1, Jian Zhang1,2.   

Abstract

Allosteric modulators bound to structurally diverse allosteric sites can achieve better pharmacological advantages than orthosteric ligands. The discovery of allosteric modulators, however, has been traditionally serendipitous, owing to the complex nature of allosteric modulation. Recent advances in the understanding of allosteric regulatory mechanisms and remarkable availability of structural data of allosteric proteins and modulators, as well as their complexes, have greatly contributed to the development of various computational approaches to guide the structure-based discovery of allosteric modulators. This Perspective first outlines the evolution of the allosteric concept and describes the advantages and hurdles facing allosteric modulator discovery. The current available computational approaches, together with experimental approaches aiming to highlight allosteric studies, are then highlighted, emphasizing successful examples with their combined applications. We aimed to increase the awareness of the feasibility of the structure-based discovery of allosteric modulators using an integrated computational and experimental paradigm.

Mesh:

Substances:

Year:  2019        PMID: 30817889     DOI: 10.1021/acs.jmedchem.8b01749

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  42 in total

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Review 2.  CDK9 inhibitors in cancer research.

Authors:  Zhi Huang; Tianqi Wang; Cheng Wang; Yan Fan
Journal:  RSC Med Chem       Date:  2022-04-20

3.  Understanding gilteritinib resistance to FLT3-F691L mutation through an integrated computational strategy.

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4.  Insights into the Allosteric Effect of SENP1 Q597A Mutation on the Hydrolytic Reaction of SUMO1 via an Integrated Computational Study.

Authors:  Mingfei Ji; Zongtao Chai; Jie Chen; Gang Li; Qiang Li; Miao Li; Yelei Ding; Shaoyong Lu; Guanqun Ju; Jianquan Hou
Journal:  Molecules       Date:  2022-06-28       Impact factor: 4.927

5.  Allosteric Hotspots in the Main Protease of SARS-CoV-2.

Authors:  Léonie Strömich; Nan Wu; Mauricio Barahona; Sophia N Yaliraki
Journal:  J Mol Biol       Date:  2022-07-16       Impact factor: 6.151

Review 6.  Recent advances suggest increased influence of selective pressure in allostery.

Authors:  Archana S Bhat; Richard Dustin Schaeffer; Lisa Kinch; Kirill E Medvedev; Nick V Grishin
Journal:  Curr Opin Struct Biol       Date:  2020-04-14       Impact factor: 6.809

7.  Molecular Dynamics-Based Allosteric Prediction Method to Design Key Residues in Threonine Dehydrogenase for Amino-Acid Production.

Authors:  Mingyu Wu; Yu Sun; Meiru Zhu; Laiyu Zhu; Junhong Lü; Feng Geng
Journal:  ACS Omega       Date:  2021-04-15

8.  How does nintedanib overcome cancer drug-resistant mutation of RET protein-tyrosine kinase: insights from molecular dynamics simulations.

Authors:  Shu Cao; Xu Jiang; Changbin Tan; Ming Fu; Wenqing Xiong; Dong Ji; Jun Lv
Journal:  J Mol Model       Date:  2021-11-02       Impact factor: 1.810

9.  Discovery of cryptic allosteric sites using reversed allosteric communication by a combined computational and experimental strategy.

Authors:  Duan Ni; Jiacheng Wei; Xinheng He; Ashfaq Ur Rehman; Xinyi Li; Yuran Qiu; Jun Pu; Shaoyong Lu; Jian Zhang
Journal:  Chem Sci       Date:  2020-11-02       Impact factor: 9.825

10.  Mechanism of allosteric activation of SIRT6 revealed by the action of rationally designed activators.

Authors:  Shaoyong Lu; Yingyi Chen; Jiacheng Wei; Mingzhu Zhao; Duan Ni; Xinheng He; Jian Zhang
Journal:  Acta Pharm Sin B       Date:  2020-09-19       Impact factor: 11.413

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