Literature DB >> 30808531

Diverse Genome Topologies Characterize Dosage Compensation across Species.

William Jordan1, Leila E Rieder2, Erica Larschan3.   

Abstract

Dosage compensation is the process by which transcript levels of the X chromosome are equalized with those of autosomes. Although diverse mechanisms of dosage compensation have evolved across species, these mechanisms all involve distinguishing the X chromosome from autosomes. Because one chromosome is singled out from other chromosomes for precise regulation, dosage compensation serves as an important model for understanding how specific cis-elements are identified within the highly compacted 3D genome to co-regulate thousands of genes. Recently, multiple genomic approaches have provided key insights into the mechanisms of dosage compensation, extending what we have learned from classical genetic studies. In the future, newer genomic approaches that require little starting material show great promise to provide an understanding of the heterogeneity of dosage compensation between cells and how it functions in nonmodel organisms.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 30808531      PMCID: PMC6430960          DOI: 10.1016/j.tig.2019.02.001

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  61 in total

1.  Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers.

Authors:  Nick Gilbert; Shelagh Boyle; Heike Fiegler; Kathryn Woodfine; Nigel P Carter; Wendy A Bickmore
Journal:  Cell       Date:  2004-09-03       Impact factor: 41.582

2.  Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

Authors:  Marieke Simonis; Petra Klous; Erik Splinter; Yuri Moshkin; Rob Willemsen; Elzo de Wit; Bas van Steensel; Wouter de Laat
Journal:  Nat Genet       Date:  2006-10-08       Impact factor: 38.330

Review 3.  X-Chromosome dosage compensation.

Authors:  Barbara J Meyer
Journal:  WormBook       Date:  2005-06-25

Review 4.  Sex chromosome specialization and degeneration in mammals.

Authors:  Jennifer A Marshall Graves
Journal:  Cell       Date:  2006-03-10       Impact factor: 41.582

5.  A morphological distinction between neurones of the male and female, and the behaviour of the nucleolar satellite during accelerated nucleoprotein synthesis.

Authors:  M L BARR; E G BERTRAM
Journal:  Nature       Date:  1949-04-30       Impact factor: 49.962

6.  Capturing chromosome conformation.

Authors:  Job Dekker; Karsten Rippe; Martijn Dekker; Nancy Kleckner
Journal:  Science       Date:  2002-02-15       Impact factor: 47.728

7.  An MLL/COMPASS subunit functions in the C. elegans dosage compensation complex to target X chromosomes for transcriptional regulation of gene expression.

Authors:  Rebecca R Pferdehirt; William S Kruesi; Barbara J Meyer
Journal:  Genes Dev       Date:  2011-03-01       Impact factor: 11.361

8.  High-resolution genome-wide mapping of the primary structure of chromatin.

Authors:  Zhenhai Zhang; B Franklin Pugh
Journal:  Cell       Date:  2011-01-21       Impact factor: 41.582

9.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

10.  A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome.

Authors:  Artyom A Alekseyenko; Shouyong Peng; Erica Larschan; Andrey A Gorchakov; Ok-Kyung Lee; Peter Kharchenko; Sean D McGrath; Charlotte I Wang; Elaine R Mardis; Peter J Park; Mitzi I Kuroda
Journal:  Cell       Date:  2008-08-22       Impact factor: 41.582

View more
  7 in total

Review 1.  The X chromosome in C. elegans sex determination and dosage compensation.

Authors:  Barbara J Meyer
Journal:  Curr Opin Genet Dev       Date:  2022-04-28       Impact factor: 4.665

2.  Dosage compensation in Bombyx mori is achieved by partial repression of both Z chromosomes in males.

Authors:  Leah F Rosin; Dahong Chen; Yang Chen; Elissa P Lei
Journal:  Proc Natl Acad Sci U S A       Date:  2022-03-03       Impact factor: 12.779

Review 3.  Incomplete Penetrance and Variable Expressivity: From Clinical Studies to Population Cohorts.

Authors:  Rebecca Kingdom; Caroline F Wright
Journal:  Front Genet       Date:  2022-07-25       Impact factor: 4.772

4.  Combinatorial clustering of distinct DNA motifs directs synergistic binding of Caenorhabditis elegans dosage compensation complex to X chromosomes.

Authors:  Nicholas J Fuda; Katjuša Brejc; William S Kruesi; Edward J Ralston; Rachel Bigley; Aram Shin; Miki Okada; Barbara J Meyer
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-06       Impact factor: 12.779

5.  Comprehensive Analysis of the Transcriptome-Wide m6A Methylome in Pterygium by MeRIP Sequencing.

Authors:  Yaping Jiang; Xin Zhang; Xiaoyan Zhang; Kun Zhao; Jing Zhang; Chuanxi Yang; Yihui Chen
Journal:  Front Cell Dev Biol       Date:  2021-06-25

Review 6.  Mechanisms of sex determination and X-chromosome dosage compensation.

Authors:  Barbara J Meyer
Journal:  Genetics       Date:  2022-02-04       Impact factor: 4.402

7.  The zinc finger protein CLAMP promotes long-range chromatin interactions that mediate dosage compensation of the Drosophila male X-chromosome.

Authors:  William Jordan; Erica Larschan
Journal:  Epigenetics Chromatin       Date:  2021-06-29       Impact factor: 4.954

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.