Literature DB >> 30806797

Physical properties of model biological lipid bilayers: insights from all-atom molecular dynamics simulations.

Ganesh Shahane1, Wei Ding2, Michail Palaiokostas2, Mario Orsi3.   

Abstract

The physical properties of lipid bilayers are sensitive to the specific type and composition of the lipids that make up the many different types of cell membranes. Studying model bilayers of representative heterogeneous compositions can provide key insights into membrane functionality. In this work, we use atomistic molecular dynamics simulations to characterize key properties in a number of bilayer membranes of varying composition. We first examine basic properties, such as lipid area, volume, and bilayer thickness, of simple, homogeneous bilayers comprising several lipid types, which are prevalent in biological membranes. Such lipids are then used in simulations of heterogeneous systems representative of bacterial, mammalian, and cancer membranes. Our analysis is especially focused on depth-dependent, transmembrane profiles; in particular, we calculate lateral pressure and dipole potential profiles, two fundamental properties which play key roles in a large number of biological functions.

Entities:  

Keywords:  Dipole potential; Lateral pressure; Lipid bilayer; Molecular dynamics simulations

Year:  2019        PMID: 30806797     DOI: 10.1007/s00894-019-3964-0

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  17 in total

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Authors:  Ritobrita Chakraborty; Sandip Dey; Pallabi Sil; Simanta Sarani Paul; Dipita Bhattacharyya; Anirban Bhunia; Jayati Sengupta; Krishnananda Chattopadhyay
Journal:  Commun Biol       Date:  2021-05-03

8.  Alteration of lipid bilayer mechanics by volatile anesthetics: Insights from μs-long molecular dynamics simulations.

Authors:  Eric A Zizzi; Marco Cavaglià; Jack A Tuszynski; Marco A Deriu
Journal:  iScience       Date:  2022-02-18

Review 9.  Phosphatidylglyerol Lipid Binding at the Active Site of an Intramembrane Protease.

Authors:  Ana-Nicoleta Bondar
Journal:  J Membr Biol       Date:  2020-11-18       Impact factor: 1.843

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Journal:  ACS Cent Sci       Date:  2020-09-23       Impact factor: 14.553

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