Literature DB >> 30806616

Tamlana carrageenivorans sp. nov., a carrageenan-degrading bacterium isolated from seawater.

Jaejoon Jung1, Seung Seob Bae1, Dawoon Chung1, Kyunghwa Baek1.   

Abstract

A Gram-stain-negative, aerobic, non-motile, rod-shaped, agarolytic and carrageenolytic bacterial strain, designated UJ94T, was isolated from seawater of Uljin in the Republic of Korea. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain UJ94T shared sequence similarities of 98.4, 96.1 and 95.4 % with Tamlana agarivorans JW-26T, Tamlana sedimentorum KMM 9545T and Tamlana crocina HST1-43T, respectively. Growth of strain UJ94T was observed at 4-37 °C and pH 6.5-8.0 in the presence of 2-9 % (w/v) NaCl. The major fatty acids of strain UJ94T were iso-C15 : 0, summed feature 3 (C16 : 1ω7c/C16 : 1ω6c) and iso-C17 : 0 3-OH; MK-6 was the predominant menaquinone. Phosphatidylethanolamine, two unidentified aminolipids and five unidentified lipids were detected as major polar lipids. The whole circular genome comprised 4 116 543 bp and had a G+C content of 35.2 mol%. The ranges of average nucleotide identity and in silico DNA-DNA hybridization estimated by genome-to-genome distance were 90.6-74.2 % and 47.6-14.6 %, respectively, with the type strains of T. agarivorans and T. sedimentorum. The present polyphasic study, including phylogenetic, chemotaxonomic, biochemical and genomic data, suggested that strain UJ94T represents a novel species of the genus Tamlana, for which the name Tamlana carrageenivorans sp. nov. is proposed. The type strain is UJ94T (=KCTC 62451T=NBRC 113234T).

Entities:  

Keywords:  Flavobacteriaceae; Tamlana; agarolytic; carrageenolytic; marine bacterium

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Year:  2019        PMID: 30806616     DOI: 10.1099/ijsem.0.003318

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  2 in total

1.  Tamlana haliotis sp. nov., isolated from the gut of the abalone Haliotis rubra.

Authors:  Wen-Rui Cao; Bang-Tao Liu; Xun-Ke Sun; Yuan-Yuan Sun; Ming-Yu Jiang; Zong-Jun Du
Journal:  Arch Microbiol       Date:  2021-03-03       Impact factor: 2.552

2.  Carrageenan oligosaccharides and associated carrageenan-degrading bacteria induce intestinal inflammation in germ-free mice.

Authors:  Yeshi Yin; Miaomiao Li; Weizhong Gu; Benhua Zeng; Wei Liu; Liying Zhu; Xionge Pi; Donald A Primerano; Hongwei D Yu; Hong Wei; Guangli Yu; Xin Wang
Journal:  J Genet Genomics       Date:  2021-08-13       Impact factor: 5.723

  2 in total

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