| Literature DB >> 30805369 |
Shimin Hu1, Shujuan Ma1, Xun Li2, Zhengwen Tian1, Huiling Liang1, Junxia Yan1, Mengshi Chen1, Hongzhuan Tan1.
Abstract
BACKGROUND: Solute carrier family 2 member 4- (SLC2A4-) retinol binding protein-4- (RBP4-) phosphoenolpyruvate carboxykinase 1 (PCK1)/phosphoinositide 3-kinase (PI3K) is an adipocyte derived "signalling pathway" that may contribute to the pathogenesis of type 2 diabetes mellitus (T2DM). We explored whether single nucleotide polymorphisms (SNPs) of these "signalling pathway" genes are associated with gestational diabetes mellitus (GDM).Entities:
Mesh:
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Year: 2019 PMID: 30805369 PMCID: PMC6363241 DOI: 10.1155/2019/7398063
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Information for selected SNPs.
| Gene | dbSNP ID | Functional Consequence | Alleles | HWE p value | MAF | SNPs covered by tagSNP |
|---|---|---|---|---|---|---|
|
| rs222852 | intron variant | GA | 0.955 | 0.38 | |
| rs5418# | UTR variant 5 prime | GA | 0.935 | 0.40 | rs5417, rs2654185 | |
| rs5435# | missense,synonymous codon | CT | 0.492 | 0.33 | rs222849 | |
| rs8082645 | UTR variant 3 prime | TG | 0.882 | 0.41 | ||
|
| rs17108991# | intron variant | TG | 0.091 | 0.11 | rs13376835 |
| rs34571439 | downstream variant 500B | TG | 0.251 | 0.12 | ||
| rs3758539 | upstream variant 2KB | GA | 0.358 | 0.13 | ||
| rs7079946# | intron variant | TA | 0.194 | 0.15 | rs7094671 | |
| rs7091052 | intron variant | CT | 0.078 | 0.14 | ||
|
| rs1042531 | UTR variant 3 prime | TG | 0.113 | 0.19 | |
| rs2236745# | intron variant | TC | 0.875 | 0.43 | rs1328756, rs1328757, rs2071023, rs2236744 | |
| rs28359554 | UTR variant 3 prime | TC | 0.494 | 0.29 | ||
| rs707555# | missense | CG | 0.623 | 0.22 | rs2070756 | |
|
| rs1819987# | intron variant | GC | 0.993 | 0.41 | rs2161120, rs2302975, rs6861401, rs6876003, rs6890202, rs10940160 |
| rs34309# | intron variant | GA | 0.213 | 0.32 | rs171649, rs173703, rs251408, rs831229, rs863818, rs2431166, rs2431167 | |
| rs40419# | intron variant | CT | 0.639 | 0.19 | rs251398, rs706711, rs831227, rs10940157, rs13173003 | |
| rs6890176# | intron variant | GA | 0.806 | 0.18 | rs2302976, rs6863431,rs6893676, rs10515074, rs10940159, rs12656176, rs16897558, rs16897601 |
These SNPs were found to be associated with GDM, T2DM, or metabolic syndrome risk in previous studies. #These SNPs were tagSNPs. The second allele was the minor allele.
Demographic and clinical characteristics of the study subjects.
| Controls (N=367) | Cases (N=334) |
| |
|---|---|---|---|
| Maternal age, years | 29(28,32) | 29(27,32) | 0.672 |
| Gestational age at sampling, weeks | 25.11±2.724 | 25.35±2.948 | 0.458 |
| Pre-pregnancy BMI | 20.55(19.14,22.64) | 22.31(20.29,24.14) |
|
| Weekly BMI growtha | 0.114±0.054 | 0.131±0.056 |
|
| SBPb | 111±10.30 | 116±11.12 |
|
| DBPb | 70±8.38 | 74±8.09 |
|
| Parity | |||
| 0 | 230(62.7%) | 216(64.7%) | 0.312 |
| 1 | 123(33.5%) | 93(27.8%) | |
| 2 | 5(1.4%) | 7(2.1%) | |
| Family history of diabetesc | |||
| Yes | 62(17.4%) | 94(29.3%) |
|
| No | 295(82.6%) | 227(70.7%) |
The Wilcoxon rank sum test was used due to a nonnormal distribution of the tested characteristics, and data are presented as medians and quartiles. Student's t-test was used due to a normal distribution of the tested characteristics, and data are presented as the mean and SDs. A Chi-square test was used to analyse data presented as a ratio. a BMI measured on the morning of the oral glucose tolerance test minus the prepregnancy BMI and then divided by the gestational age (weeks) was defined as “Weekly BMI growth”; b SBP (systolic blood pressure) and DBP (diastolic blood pressure) were the blood pressures measured on the morning of the oral glucose tolerance test. cRelatives covered grandfather, grandmother, maternal grandfather, maternal grandmother, father, mother, brother, sister, and brother and sister of father and mother.
The distribution of alleles and genotypes of RBP4 rs7091052.
| Gene | SNP | Allele/Genotype | Controls | Cases |
|
| ||
|---|---|---|---|---|---|---|---|---|
| n | % | n | % | |||||
|
| rs7091052 | C | 672 | 91.8 | 586 | 87.7 |
|
|
| T | 60 | 8.2 | 82 | 12.3 | ||||
| CC | 311 | 85.0 | 254 | 76.0 |
|
| ||
| TT | 5 | 1.4 | 2 | 0.6 | ||||
| CT | 50 | 13.7 | 78 | 23.4 | ||||
The p value was less than or equal to 0.004, which was α after Bonferroni correction (α=0.05/14=0.004). Fourteen SNPs were included in the analyses.
Logistic regression analysis of RBP4 rs7091052 and GDM risk.
| Gene | SNP | Genotype | OR |
| 95%CI |
|---|---|---|---|---|---|
|
| rs7091052 | Recessive model | 0.314 | 0.211 | 0.051,1.933 |
| Dominance model | 1.710 |
| 1.129,2.591 | ||
| Additive model | 1.493 |
| 1.017,2.191 |
The covariates in the logistic regression analysis were maternal age, prepregnancy BMI, and weekly BMI growth.
The association of genetic variants of SLC2A4, RBP4, PCK1, and PIK3R1 with OGTT, fasting insulin, and HOMA-IR levels.
| Gene | SNP | Genetic model | Fasting BG# | 1 h BG# | 2 h BG# | Fasting insulin | HOMA-IR | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Beta |
| Beta |
| Beta |
| Beta |
| Beta |
| |||
|
| rs5435 | Recessive model | 0.171 |
| 0.338 | 0.180 | 0.287 | 0.169 | 3.166 |
| 0.879 |
|
|
| rs7091052 | Dominance model | 0.109 | 0.195 | 0.542 |
| 0.004 | 0.987 | -0.060 | 0.927 | 0.025 | 0.890 |
|
| rs1042531 | Recessive model | 0.176 | 0.133 | 0.455 | 0.185 | 0.428 | 0.134 | 5.443 |
| 1.485 |
|
| Additive model | 0.052 | 0.271 | 0.089 | 0.520 | 0.139 | 0.230 | 1.228 |
| 0.341 |
| ||
|
| rs2236745 | Dominance model | 0.040 | 0.515 | -0.056 | 0.755 | -0.002 | 0.989 | 1.571 |
| 0.352 | 0.051 |
|
| rs34309 | Recessive model | -0.222 |
| -0.701 |
| -0.395 | 0.069 | 0.250 | 0.813 | -0.088 | 0.735 |
The covariates in these linear regression analyses were maternal age, prepregnancy BMI, and weekly BMI growth. BG# is the abbreviation for blood glucose. p value was less than 0.004, which was α after Bonferroni correction (α=0.05/14=0.004); fourteen SNPs were included in the analyses. § meant that the p value was less than 0.001, which was α after stringent Bonferroni correction (α=0.05/(14∗3)=0.001); three genetic models of each SNP have been analysed.