Literature DB >> 30800614

Structural introspection of a putative fluoride transporter in plants.

Aditya Banerjee1, Aryadeep Roychoudhury1.   

Abstract

The xenobiotic fluoride is a detrimental toxin which is exported by a double-barrelled fluoride channel (Fluc) in prokaryotes and a single-barrelled fluoride exporter (FEX) in lower eukaryotes. The presence of FEX gene in higher plant species has not been reported till date. In this communication, we have identified FEXs across nine plant species belonging to five different families. Homology modelling predicted the sequential and structural conservation of crucial residues in plant FEXs. It was predicted that the N-terminal segments were the main target sites for phosphorylation. Other post-translational modifications included Arg methylation, Lys acetylation and Cys S-nitrosylation, all of which contribute to protein stability and function. FEXs were predicted to contain lipid moieties which anchor the transporters to the plasma membrane. The crystallizability along with associated properties of plant FEXs was also analyzed to facilitate future experimental analyses. The predicted RNA structure of OsFEX formed several pseudoknots, though no riboswitches could be detected from our prediction. The analysis of upstream regions of FEX in representative plants represented that this gene could be responsive to phytohormone-mediated signaling. This is the first novel report highlighting that FEX genes in plants are probably expressed in a tissue-specific pattern and possibly via a phytohormone-dependent pathway to encode functional FEX proteins during fluoride stress.

Entities:  

Keywords:  Bioinformatics; Fluoride transporter; Gene ontology function; Homology modelling; Intrinsic disorder; Phylogram; Post-translational modifications; Promoter analysis; Riboswitch

Year:  2019        PMID: 30800614      PMCID: PMC6386761          DOI: 10.1007/s13205-019-1629-4

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  44 in total

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Journal:  J Mol Biol       Date:  1999-12-17       Impact factor: 5.469

2.  PlantGDB, plant genome database and analysis tools.

Authors:  Qunfeng Dong; Shannon D Schlueter; Volker Brendel
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  Riboswitch finder--a tool for identification of riboswitch RNAs.

Authors:  Peter Bengert; Thomas Dandekar
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

Review 4.  Acetylation and deacetylation of non-histone proteins.

Authors:  Michele A Glozak; Nilanjan Sengupta; Xiaohong Zhang; Edward Seto
Journal:  Gene       Date:  2005-11-11       Impact factor: 3.688

Review 5.  Protein S-nitrosylation: purview and parameters.

Authors:  Douglas T Hess; Akio Matsumoto; Sung-Oog Kim; Harvey E Marshall; Jonathan S Stamler
Journal:  Nat Rev Mol Cell Biol       Date:  2005-02       Impact factor: 94.444

6.  Gibberellin-responsive elements in the promoter of a barley high-pI alpha-amylase gene.

Authors:  F Gubler; J V Jacobsen
Journal:  Plant Cell       Date:  1992-11       Impact factor: 11.277

7.  Protein disorder prediction: implications for structural proteomics.

Authors:  Rune Linding; Lars Juhl Jensen; Francesca Diella; Peer Bork; Toby J Gibson; Robert B Russell
Journal:  Structure       Date:  2003-11       Impact factor: 5.006

8.  The importance of intrinsic disorder for protein phosphorylation.

Authors:  Lilia M Iakoucheva; Predrag Radivojac; Celeste J Brown; Timothy R O'Connor; Jason G Sikes; Zoran Obradovic; A Keith Dunker
Journal:  Nucleic Acids Res       Date:  2004-02-11       Impact factor: 16.971

9.  Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots.

Authors:  A Xayaphoummine; T Bucher; H Isambert
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

10.  TM-align: a protein structure alignment algorithm based on the TM-score.

Authors:  Yang Zhang; Jeffrey Skolnick
Journal:  Nucleic Acids Res       Date:  2005-04-22       Impact factor: 16.971

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  5 in total

1.  Spermidine application reduces fluoride uptake and ameliorates physiological injuries in a susceptible rice cultivar by activating diverse regulators of the defense machinery.

Authors:  Aditya Banerjee; Ankur Singh; Aryadeep Roychoudhury
Journal:  Environ Sci Pollut Res Int       Date:  2019-11-16       Impact factor: 4.223

2.  Differential regulation of defence pathways in aromatic and non-aromatic indica rice cultivars towards fluoride toxicity.

Authors:  Aditya Banerjee; Aryadeep Roychoudhury
Journal:  Plant Cell Rep       Date:  2019-06-07       Impact factor: 4.570

3.  Genome-wide analysis of fluoride exporter genes in plants.

Authors:  Samridhi Agarwal; Preetom Regon; Mehzabin Rehman; Bhaben Tanti; Sanjib Kumar Panda
Journal:  3 Biotech       Date:  2021-02-12       Impact factor: 2.406

4.  Camellia sinensis Chloroplast Fluoride Efflux Gene CsABCB9 Is Involved in the Fluoride Tolerance Mechanism.

Authors:  Bingbing Luo; Min Guang; Wenjing Yun; Shitao Ding; Suna Ren; Hongjian Gao
Journal:  Int J Mol Sci       Date:  2022-07-14       Impact factor: 6.208

5.  Functional and molecular characterization of fluoride exporter (FEX) from rice and its constitutive overexpression in Nicotiana benthamiana to promote fluoride tolerance.

Authors:  Aditya Banerjee; Aryadeep Roychoudhury
Journal:  Plant Cell Rep       Date:  2021-06-26       Impact factor: 4.570

  5 in total

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