Literature DB >> 30799880

The 2018 correlative microscopy techniques roadmap.

Toshio Ando1, Satya Prathyusha Bhamidimarri2, Niklas Brending3, H Colin-York4, Lucy Collinson5, Niels De Jonge6,7, P J de Pablo8,9, Elke Debroye10, Christian Eggeling4,11,12,13, Christian Franck14, Marco Fritzsche4,15, Hans Gerritsen16, Ben N G Giepmans17, Kay Grunewald18,19,20, Johan Hofkens10, Jacob P Hoogenboom21,22, Kris P F Janssen10, Rainer Kaufman18,19,23, Judith Klumpermann24, Nyoman Kurniawan25, Jana Kusch26, Nalan Liv24, Viha Parekh25, Diana B Peckys27, Florian Rehfeldt28, David C Reutens25, Maarten B J Roeffaers29, Tim Salditt30, Iwan A T Schaap31,32, Ulrich S Schwarz33, Paul Verkade34, Michael W Vogel25, Richard Wagner2, Mathias Winterhalter2, Haifeng Yuan10, Giovanni Zifarelli35.   

Abstract

Developments in microscopy have been instrumental to progress in the life sciences, and many new techniques have been introduced and led to new discoveries throughout the last century. A wide and diverse range of methodologies is now available, including electron microscopy, atomic force microscopy, magnetic resonance imaging, small-angle x-ray scattering and multiple super-resolution fluorescence techniques, and each of these methods provides valuable read-outs to meet the demands set by the samples under study. Yet, the investigation of cell development requires a multi-parametric approach to address both the structure and spatio-temporal organization of organelles, and also the transduction of chemical signals and forces involved in cell-cell interactions. Although the microscopy technologies for observing each of these characteristics are well developed, none of them can offer read-out of all characteristics simultaneously, which limits the information content of a measurement. For example, while electron microscopy is able to disclose the structural layout of cells and the macromolecular arrangement of proteins, it cannot directly follow dynamics in living cells. The latter can be achieved with fluorescence microscopy which, however, requires labelling and lacks spatial resolution. A remedy is to combine and correlate different readouts from the same specimen, which opens new avenues to understand structure-function relations in biomedical research. At the same time, such correlative approaches pose new challenges concerning sample preparation, instrument stability, region of interest retrieval, and data analysis. Because the field of correlative microscopy is relatively young, the capabilities of the various approaches have yet to be fully explored, and uncertainties remain when considering the best choice of strategy and workflow for the correlative experiment. With this in mind, the Journal of Physics D: Applied Physics presents a special roadmap on the correlative microscopy techniques, giving a comprehensive overview from various leading scientists in this field, via a collection of multiple short viewpoints.

Entities:  

Keywords:  atomic force microscopy; correlative microscopy; electron microscopy; fluorescence microscopy; magnetic resonance imaging; super-resolution microscopy; x-ray microscopy

Year:  2018        PMID: 30799880      PMCID: PMC6372154          DOI: 10.1088/1361-6463/aad055

Source DB:  PubMed          Journal:  J Phys D Appl Phys        ISSN: 0022-3727            Impact factor:   3.207


  149 in total

Review 1.  Fluorescence spectroscopy of single biomolecules.

Authors:  S Weiss
Journal:  Science       Date:  1999-03-12       Impact factor: 47.728

2.  Parallelized STED fluorescence nanoscopy.

Authors:  Pit Bingen; Matthias Reuss; Johann Engelhardt; Stefan W Hell
Journal:  Opt Express       Date:  2011-11-21       Impact factor: 3.894

3.  Site-specific 3D imaging of cells and tissues with a dual beam microscope.

Authors:  Jurgen A W Heymann; Mike Hayles; Ingo Gestmann; Lucille A Giannuzzi; Ben Lich; Sriram Subramaniam
Journal:  J Struct Biol       Date:  2006-04-04       Impact factor: 2.867

4.  High-resolution single-turnover mapping reveals intraparticle diffusion limitation in Ti-MCM-41-catalyzed epoxidation.

Authors:  Gert De Cremer; Maarten B J Roeffaers; Evelyne Bartholomeeusen; Kaifeng Lin; Peter Dedecker; Paolo P Pescarmona; Pierre A Jacobs; Dirk E De Vos; Johan Hofkens; Bert F Sels
Journal:  Angew Chem Int Ed Engl       Date:  2010       Impact factor: 15.336

5.  Protrusion force microscopy reveals oscillatory force generation and mechanosensing activity of human macrophage podosomes.

Authors:  Anna Labernadie; Anaïs Bouissou; Patrick Delobelle; Stéphanie Balor; Raphael Voituriez; Amsha Proag; Isabelle Fourquaux; Christophe Thibault; Christophe Vieu; Renaud Poincloux; Guillaume M Charrière; Isabelle Maridonneau-Parini
Journal:  Nat Commun       Date:  2014-11-11       Impact factor: 14.919

Review 6.  Challenges in quantitative single molecule localization microscopy.

Authors:  A Shivanandan; H Deschout; M Scarselli; A Radenovic
Journal:  FEBS Lett       Date:  2014-06-10       Impact factor: 4.124

7.  Whole-brain serial-section electron microscopy in larval zebrafish.

Authors:  David Grant Colburn Hildebrand; Marcelo Cicconet; Russel Miguel Torres; Woohyuk Choi; Tran Minh Quan; Jungmin Moon; Arthur Willis Wetzel; Andrew Scott Champion; Brett Jesse Graham; Owen Randlett; George Scott Plummer; Ruben Portugues; Isaac Henry Bianco; Stephan Saalfeld; Alexander David Baden; Kunal Lillaney; Randal Burns; Joshua Tzvi Vogelstein; Alexander Franz Schier; Wei-Chung Allen Lee; Won-Ki Jeong; Jeff William Lichtman; Florian Engert
Journal:  Nature       Date:  2017-05-10       Impact factor: 49.962

8.  Model-based traction force microscopy reveals differential tension in cellular actin bundles.

Authors:  Jérôme R D Soiné; Christoph A Brand; Jonathan Stricker; Patrick W Oakes; Margaret L Gardel; Ulrich S Schwarz
Journal:  PLoS Comput Biol       Date:  2015-03-06       Impact factor: 4.475

9.  High-resolution, high-throughput imaging with a multibeam scanning electron microscope.

Authors:  A L Eberle; S Mikula; R Schalek; J Lichtman; M L Knothe Tate; D Zeidler
Journal:  J Microsc       Date:  2015-01-27       Impact factor: 1.758

10.  Local variations of HER2 dimerization in breast cancer cells discovered by correlative fluorescence and liquid electron microscopy.

Authors:  Diana B Peckys; Ulrike Korf; Niels de Jonge
Journal:  Sci Adv       Date:  2015-07-17       Impact factor: 14.136

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  19 in total

1.  Registration and Visualization of Correlative Super-Resolution Microscopy Data.

Authors:  Sebastian Reinhard; Sarah Aufmkolk; Markus Sauer; Sören Doose
Journal:  Biophys J       Date:  2019-05-03       Impact factor: 4.033

Review 2.  Sample preparation strategies for efficient correlation of 3D SIM and soft X-ray tomography data at cryogenic temperatures.

Authors:  Chidinma A Okolo; Ilias Kounatidis; Johannes Groen; Kamal L Nahas; Stefan Balint; Thomas M Fish; Mohamed A Koronfel; Aitziber L Cortajarena; Ian M Dobbie; Eva Pereiro; Maria Harkiolaki
Journal:  Nat Protoc       Date:  2021-05-14       Impact factor: 13.491

3.  Correlative two-color two-photon (2C2P) excitation STED microscopy.

Authors:  Christoph Polzer; Stefan Ness; Mojtaba Mohseni; Thomas Kellerer; Markus Hilleringmann; Joachim Rädler; Thomas Hellerer
Journal:  Biomed Opt Express       Date:  2019-08-07       Impact factor: 3.732

Review 4.  FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices.

Authors:  Eitan Lerner; Anders Barth; Jelle Hendrix; Benjamin Ambrose; Victoria Birkedal; Scott C Blanchard; Richard Börner; Hoi Sung Chung; Thorben Cordes; Timothy D Craggs; Ashok A Deniz; Jiajie Diao; Jingyi Fei; Ruben L Gonzalez; Irina V Gopich; Taekjip Ha; Christian A Hanke; Gilad Haran; Nikos S Hatzakis; Sungchul Hohng; Seok-Cheol Hong; Thorsten Hugel; Antonino Ingargiola; Chirlmin Joo; Achillefs N Kapanidis; Harold D Kim; Ted Laurence; Nam Ki Lee; Tae-Hee Lee; Edward A Lemke; Emmanuel Margeat; Jens Michaelis; Xavier Michalet; Sua Myong; Daniel Nettels; Thomas-Otavio Peulen; Evelyn Ploetz; Yair Razvag; Nicole C Robb; Benjamin Schuler; Hamid Soleimaninejad; Chun Tang; Reza Vafabakhsh; Don C Lamb; Claus Am Seidel; Shimon Weiss
Journal:  Elife       Date:  2021-03-29       Impact factor: 8.140

5.  Large-scale electron microscopy database for human type 1 diabetes.

Authors:  Pascal de Boer; Nicole M Pirozzi; Anouk H G Wolters; Jeroen Kuipers; Irina Kusmartseva; Mark A Atkinson; Martha Campbell-Thompson; Ben N G Giepmans
Journal:  Nat Commun       Date:  2020-05-18       Impact factor: 14.919

6.  Fluorescence strategies for mapping cell membrane dynamics and structures.

Authors:  Jagadish Sankaran; Thorsten Wohland
Journal:  APL Bioeng       Date:  2020-05-12

7.  Correlative cryo super-resolution light and electron microscopy on mammalian cells using fluorescent proteins.

Authors:  Maarten W Tuijtel; Abraham J Koster; Stefan Jakobs; Frank G A Faas; Thomas H Sharp
Journal:  Sci Rep       Date:  2019-02-04       Impact factor: 4.996

Review 8.  Role of integrative structural biology in understanding transcriptional initiation.

Authors:  Michael J Trnka; Riccardo Pellarin; Philip J Robinson
Journal:  Methods       Date:  2019-03-16       Impact factor: 3.608

9.  Correlating Super-Resolution Microscopy and Transmission Electron Microscopy Reveals Multiparametric Heterogeneity in Nanoparticles.

Authors:  Teodora Andrian; Pietro Delcanale; Silvia Pujals; Lorenzo Albertazzi
Journal:  Nano Lett       Date:  2021-06-14       Impact factor: 11.189

10.  Quantifying nanodiamonds biodistribution in whole cells with correlative iono-nanoscopy.

Authors:  Zhaohong Mi; Ce-Belle Chen; Hong Qi Tan; Yanxin Dou; Chengyuan Yang; Shuvan Prashant Turaga; Minqin Ren; Saumitra K Vajandar; Gin Hao Yuen; Thomas Osipowicz; Frank Watt; Andrew A Bettiol
Journal:  Nat Commun       Date:  2021-08-02       Impact factor: 14.919

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