Literature DB >> 30797092

A 'culture' shift: Application of molecular techniques for diagnosing polymicrobial infections.

Yi Zhang1, Anne Hu2, Nadya Andini2, Samuel Yang3.   

Abstract

With the advancement of microbiological discovery, it is evident that many infections, particularly bloodstream infections, are polymicrobial in nature. Consequently, new challenges have emerged in identifying the numerous etiologic organisms in an accurate and timely manner using the current diagnostic standard. Various molecular diagnostic methods have been utilized as an effort to provide a fast and reliable identification in lieu or parallel to the conventional culture-based methods. These technologies are mostly based on nucleic acid, proteins, or physical properties of the pathogens with differing advantages and limitations. This review evaluates the different molecular methods and technologies currently available to diagnose polymicrobial infections, which will help determine the most appropriate option for future diagnosis.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bacterial infection; Bloodstream infection; Broad testing; Drug resistance; Fingerprinting; Molecular diagnostics; Polymicrobial infection; Sepsis; Sequencing; Target-specific

Mesh:

Substances:

Year:  2019        PMID: 30797092      PMCID: PMC6447436          DOI: 10.1016/j.biotechadv.2019.02.013

Source DB:  PubMed          Journal:  Biotechnol Adv        ISSN: 0734-9750            Impact factor:   14.227


  191 in total

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2.  Impact of inadequate empirical therapy on the mortality of patients with bloodstream infections: a propensity score-based analysis.

Authors:  Pilar Retamar; María M Portillo; María Dolores López-Prieto; Fernando Rodríguez-López; Marina de Cueto; María V García; María J Gómez; Alfonso Del Arco; Angel Muñoz; Antonio Sánchez-Porto; Manuel Torres-Tortosa; Andrés Martín-Aspas; Ascensión Arroyo; Carolina García-Figueras; Federico Acosta; Juan E Corzo; Laura León-Ruiz; Trinidad Escobar-Lara; Jesús Rodríguez-Baño
Journal:  Antimicrob Agents Chemother       Date:  2011-10-17       Impact factor: 5.191

Review 3.  Lab-on-a-chip devices for global health: past studies and future opportunities.

Authors:  Curtis D Chin; Vincent Linder; Samuel K Sia
Journal:  Lab Chip       Date:  2006-10-27       Impact factor: 6.799

4.  Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples.

Authors:  Henrik Hasman; Dhany Saputra; Thomas Sicheritz-Ponten; Ole Lund; Christina Aaby Svendsen; Niels Frimodt-Møller; Frank M Aarestrup
Journal:  J Clin Microbiol       Date:  2013-10-30       Impact factor: 5.948

5.  Differentiation and classification of bacteria using vancomycin functionalized silver nanorods array based surface-enhanced Raman spectroscopy and chemometric analysis.

Authors:  Xiaomeng Wu; Yao-Wen Huang; Bosoon Park; Ralph A Tripp; Yiping Zhao
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Review 6.  Matrix-assisted laser desorption ionization-time of flight (maldi-tof) mass spectrometry for detection of antibiotic resistance mechanisms: from research to routine diagnosis.

Authors:  Jaroslav Hrabák; Eva Chudácková; Radka Walková
Journal:  Clin Microbiol Rev       Date:  2013-01       Impact factor: 26.132

Review 7.  Emerging technologies for the clinical microbiology laboratory.

Authors:  Blake W Buchan; Nathan A Ledeboer
Journal:  Clin Microbiol Rev       Date:  2014-10       Impact factor: 26.132

8.  Neonatal antibiotic treatment is a risk factor for early wheezing.

Authors:  Bernt Alm; Laslo Erdes; Per Möllborg; Rolf Pettersson; S Gunnar Norvenius; Nils Aberg; Göran Wennergren
Journal:  Pediatrics       Date:  2008-04       Impact factor: 7.124

9.  Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes.

Authors:  Samuel O Oyola; Thomas D Otto; Yong Gu; Gareth Maslen; Magnus Manske; Susana Campino; Daniel J Turner; Bronwyn Macinnis; Dominic P Kwiatkowski; Harold P Swerdlow; Michael A Quail
Journal:  BMC Genomics       Date:  2012-01-03       Impact factor: 3.969

10.  A hand-powered, portable, low-cost centrifuge for diagnosing anemia in low-resource settings.

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Journal:  Am J Trop Med Hyg       Date:  2011-08       Impact factor: 2.345

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  4 in total

Review 1.  Molecular Methodologies for Improved Polymicrobial Sepsis Diagnosis.

Authors:  Mariam Doualeh; Matthew Payne; Edward Litton; Edward Raby; Andrew Currie
Journal:  Int J Mol Sci       Date:  2022-04-19       Impact factor: 6.208

Review 2.  Diagnosis of Bloodstream Infections: An Evolution of Technologies towards Accurate and Rapid Identification and Antibiotic Susceptibility Testing.

Authors:  Kristel C Tjandra; Nikhil Ram-Mohan; Ryuichiro Abe; Marjan M Hashemi; Jyong-Huei Lee; Siew Mei Chin; Manuel A Roshardt; Joseph C Liao; Pak Kin Wong; Samuel Yang
Journal:  Antibiotics (Basel)       Date:  2022-04-12

3.  Multiplex Microsphere PCR (mmPCR) Allows Simultaneous Gram Typing, Detection of Fungal DNA, and Antibiotic Resistance Genes.

Authors:  Daniel J Browne; Fang Liang; Kate H Gartlan; Patrick N A Harris; Geoffrey R Hill; Simon R Corrie; Kate A Markey
Journal:  Lab Med       Date:  2022-09-01

4.  Pathogen load and species monitored by droplet digital PCR in patients with bloodstream infections: A prospective case series study.

Authors:  Ziqiang Shao; Jingwen Zhu; Yanyan Wei; Jun Jin; Yang Zheng; Jingquan Liu; Run Zhang; Renhua Sun; Bangchuan Hu
Journal:  BMC Infect Dis       Date:  2022-10-04       Impact factor: 3.667

  4 in total

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