Literature DB >> 30793160

Anduril 2: upgraded large-scale data integration framework.

Alejandra Cervera1, Ville Rantanen1, Kristian Ovaska1, Marko Laakso1, Javier Nuñez-Fontarnau2, Amjad Alkodsi1, Julia Casado1, Chiara Facciotto1, Antti Häkkinen1, Riku Louhimo3, Sirkku Karinen1, Kaiyang Zhang1, Kari Lavikka1, Lauri Lyly1, Maninder Pal Singh1, Sampsa Hautaniemi1.   

Abstract

SUMMARY: Anduril is an analysis and integration framework that facilitates the design, use, parallelization and reproducibility of bioinformatics workflows. Anduril has been upgraded to use Scala for pipeline construction, which simplifies software maintenance, and facilitates design of complex pipelines. Additionally, Anduril's bioinformatics repository has been expanded with multiple components, and tutorial pipelines, for next-generation sequencing data analysis. AVAILABILITYAND IMPLEMENTATION: Freely available at http://anduril.org. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
© The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Year:  2019        PMID: 30793160     DOI: 10.1093/bioinformatics/btz133

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  4 in total

1.  Agile workflow for interactive analysis of mass cytometry data.

Authors:  Julia Casado; Oskari Lehtonen; Ville Rantanen; Katja Kaipio; Luca Pasquini; Antti Häkkinen; Elenora Petrucci; Johanna Hynninen; Sakari Hietanen; Olli Carpén; Mauro Biffoni; Anniina Färkkilä; Sampsa Hautaniemi
Journal:  Bioinformatics       Date:  2021-06-09       Impact factor: 6.937

2.  Automated identification of the mouse brain's spatial compartments from in situ sequencing data.

Authors:  Gabriele Partel; Markus M Hilscher; Giorgia Milli; Leslie Solorzano; Anna H Klemm; Mats Nilsson; Carolina Wählby
Journal:  BMC Biol       Date:  2020-10-19       Impact factor: 7.431

3.  CSI NGS Portal: An Online Platform for Automated NGS Data Analysis and Sharing.

Authors:  Omer An; Kar-Tong Tan; Ying Li; Jia Li; Chan-Shuo Wu; Bin Zhang; Leilei Chen; Henry Yang
Journal:  Int J Mol Sci       Date:  2020-05-28       Impact factor: 5.923

4.  Sustainable data analysis with Snakemake.

Authors:  Felix Mölder; Kim Philipp Jablonski; Brice Letcher; Michael B Hall; Christopher H Tomkins-Tinch; Vanessa Sochat; Jan Forster; Soohyun Lee; Sven O Twardziok; Alexander Kanitz; Andreas Wilm; Manuel Holtgrewe; Sven Rahmann; Sven Nahnsen; Johannes Köster
Journal:  F1000Res       Date:  2021-01-18
  4 in total

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