| Literature DB >> 30792414 |
Na Lei1,2, Hai-Bin Wang1, Yu-Song Zhang1, Jian-Hong Zhao1, Yi Zhong1, Yuan-Jie Wang1, Li-Yong Huang1, Jian-Xin Ma1, Qiang Sun2,3, Lei Yang2, Yue-Long Shu2,3, Shu-Ming Li4, Ling-Li Sun5.
Abstract
Two influenza B virus lineages, B/Victoria and B/Yamagata, are co-circulating in human population. While the two lineages are serologically distinct and TIV only contain one lineage. It is important to investigate the epidemiological and evolutionary dynamics of two influenza B virus lineages in Beijing after the free influenza vaccine policy from 2007. Here, we collected the nasopharyngeal swabs of 12657 outpatients of influenza-like illness and subtyped by real-time RT-PCR during 2011-2017. The HA and NA genes of influenza B were fully sequenced. The prevalence is the highest in the 6-17 years old group among people infected with influenza B. Yamagata-lineage virus evolved to two inter-clade from 2011-2014 to 2014-2017. The amino acids substitutions of HA1 region were R279K in strains of 2011-2014 and L173Q, M252V in strains of 2014-2017. Substitutions L58P, I146V were observed in HA1 region of Victoria-lineage virus in 2011-2012 and I117V, N129D were showed in 2015-2017. Phylogenetic analysis of NA showed Yamagata-Victoria inter-lineage reassortant occurred in 2013-2014. Influenza B mainly infect the school-aged children in Beijing and the free influenza vaccine inoculation does not seem to block school-age children from infection with influenza B. The antigen characteristics of circulating influenza B were different to the recommended vaccine strains. We concluded that the Victoria-lineage vaccine strain should been changed and the free influenza vaccine should be revalued.Entities:
Year: 2019 PMID: 30792414 PMCID: PMC6384887 DOI: 10.1038/s41598-018-38105-1
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1The percentage of influenza virus by real-time RT-PCR in surveillance seasons from 2011 to 2017. The y-axis represents positive percentage of influenza virus in assembled ILI outpatients every month. The x-axis shows month from October 2011 to September 2017. The period from October to September next year is defined as one influenza seasons. Blue boxes represent A/H1N1 virus, green boxes represent A/H3N2 virus, red boxes represent B/Yamagata-lineage, yellow boxes represent B/Victoria-lineage.
Figure 2The age distribution of Yamagata- and Victoria-lineage virus. The y-axis represents the proportion of Victoria-lineage (a) and Yamagata-lineage (b) in assembled ILI outpatients caused by influenza virus every month. The x-axis shows month from October 2011 to September 2017. The period from October to September next year is defined as one influenza seasons. The age group ≤5 years old was shown by a yellow lines; the age group 6–17 years old was shown by a green lines; the age group 18–59 years old was shown by a blue lines and the age group ≥60 years old was shown by a violet lines.
Figure 3Distribution and recommended vaccine strain of influenza B in Beijing, 2011–2017. White boxes represent Yamagata-lineage; black boxes represent Victoria-lineage. Asterisks indicate the World Health Organization–recommended influenza B vaccine strain of that year. Data from October 2012 to September 2013 had only 1 case infected by influenza B virus.
Figure 4Phylogenetic tree of the HA gene sequences of influenza B viruses. HA sequences of influenza B viruses were compared with WHO recommended candidate vaccine (▲) and reference strains. The phylogeny was reconstructed using Neighbor-Joining (NG) method. Bootstrap values (>70%) and amino acid substitutions are mapped to key branches. Yamagata-lineage (blue), Victoria-lineage (green) are indicated.
The amino acid change sites of HA1 and NA of Victoria-lineage virus. Representative strain is randomly one of strains circulating in every surveillance season.
| Representative strain | HA1 | NA | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58 | 117 | 129 | 146 | 171 | 184 | 189 | 41 | 42 | 45 | 120 | 220 | 295 | 340 | 358 | |
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| B/Beijing-Chaoyang/2/2011 | P | — | S | V | — | — | — | — | — | — | — | — | — | D | — |
| B/Beijing-Chaoyang/394/2012 | P | — | S | V | D | E | — | P | S | — | — | N | — | D | A |
| B/Beijing-Chaoyang/167/2015 | P | — | S | V | — | — | — | — | — | — | — | — | R | D | K |
| B/Beijing-Chaoyang/946/2016 | — | V | D | — | — | — | A | — | — | T | V | N | R | D | K |
| B/Beijing-Chaoyang/1047/2017 | — | V | D | — | — | — | — | — | — | — | — | N | R | D | A |
* represents vaccine virus strains. “—” represents the same amino acids comparing to the same region of vaccine virus strains.
The amino acid change sites of HA1 and NA of influenza B/Yamagata-lineage virus.
| Representative strain | HA1 | NA | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116 | 172 | 211 | 251 | 278 | 298 | 312 | 41 | 42 | 45 | 49 | 62 | 73 | 295 | 342 | |
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| B/Beijing-Chaoyang/56/2011 | K | — | — | — | — | E | K | — | — | — | — | — | — | — | — |
| B/Beijing-Chaoyang/469/2012 | K | — | — | — | — | E | K | — | — | — | — | — | — | — | — |
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| B/Beijing-Chaoyang/326/2013 | K | — | — | — | K | E | K | P | S | — | T | — | — | S | G |
| B/Beijing-Chaoyang/1327/2014 | K | — | — | — | K | E | K | P | S | — | T | — | — | S | G |
| B/Beijing-Chaoyang/930/2015 | K | Q | R | V | — | E | K | — | — | V | — | T | P | — | N |
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| B/Beijing-Chaoyang/820/2016 | — | Q | — | V | — | — | — | — | — | — | T | T | — | R | N |
| B/Beijing-Chaoyang/1240/2017 | — | Q | — | V | — | — | — | — | — | — | M | T | — | R | N |
* represents vaccine virus strains. “—” represents the same amino acids comparing to the same region of vaccine virus strains.
Figure 5Phylogenetic tree of the NA gene sequences of influenza B viruses. NA sequences of influenza B viruses were compared with WHO recommended candidate vaccine (▲) and reference strains. The phylogeny was reconstructed using Neighbor-Joining (NG) method. Bootstrap values (>70%) and amino acid substitutions are mapped to key branches. Yamagata-lineage (blue), Victoria-lineage (green) are indicated.
Amino acid substitutions found on the HA protein of influenza B viruses.
| Influenza virus lineages | Epitope | Surveillance seasonsa | Mutationb |
|---|---|---|---|
| B/Victoria-lineage | 120-loop (116–137) | 2011–2012 | N129S (5/21) |
| 2015–2017 | I117V (23/29), N129D (29/29) | ||
| 150-loop (141–150) | 2011–2012 | I146V (21/21) | |
| B/Yamagata-lineage | 120-loop (116–137) | 2013–2015 | N116K (43/44) |
aOnly amino acid substitutions shared by 50% of viruses or more in every season are reported in this table. Substitutions are compared with recommended vaccine strains in the same year. bThe frequency was the number of influenza viruses having the substitution to all the strains of influenza B virus in surveillance seasons.