Literature DB >> 30792266

Guidelines for the Preanalytical Conditions for Analyzing Circulating Cell-Free DNA.

Romain Meddeb1,2,3,4, Ekaterina Pisareva1,2,3,4, Alain R Thierry5,2,3,4.   

Abstract

Circulating cell-free DNA (cfDNA) isolated from blood has been identified as a potential biomarker in numerous fields, and has been the object of intensive research over the past decade, although its original discovery dates back 60 years. While it is already used routinely in commercial and clinical practice in oncology and prenatal testing, other potential applications have emerged, including for diabetes, cardiovascular diseases, organ transplantation, autoimmune diseases, sepsis, trauma, and sport management. As with the discovery and development of any biomarker, preanalytical requirements and documentation are as important as analytical requirements. Except for the case of noninvasive prenatal testing and prenatal diagnosis, the implementation of cfDNA in a clinical setting remains limited because of the lack of standardization of cfDNA analysis. In particular, only a few attempts have been made to collect and pool scientific data on the relevant preanalytical factors, and no standard operating procedure has yet been set. For this report, we have performed a thorough and systematic search via MEDLINE® for relevant preanalytical variables and patient factors. These form the basis of the guidelines we propose for analyzing nuclear cfDNA.
© 2019 American Association for Clinical Chemistry.

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Year:  2019        PMID: 30792266     DOI: 10.1373/clinchem.2018.298323

Source DB:  PubMed          Journal:  Clin Chem        ISSN: 0009-9147            Impact factor:   8.327


  41 in total

1.  Harmonizing Cell-Free DNA Collection and Processing Practices through Evidence-Based Guidance.

Authors:  Sarah R Greytak; Kelly B Engel; Sonya Parpart-Li; Muhammed Murtaza; Abel J Bronkhorst; Mark D Pertile; Helen M Moore
Journal:  Clin Cancer Res       Date:  2020-03-02       Impact factor: 12.531

Review 2.  Liquid biopsy enters the clinic - implementation issues and future challenges.

Authors:  Michail Ignatiadis; George W Sledge; Stefanie S Jeffrey
Journal:  Nat Rev Clin Oncol       Date:  2021-01-20       Impact factor: 66.675

Review 3.  Circulating tumor DNA profiling for childhood brain tumors: Technical challenges and evidence for utility.

Authors:  Anthony Pak-Yin Liu; Paul A Northcott; Giles W Robinson; Amar Gajjar
Journal:  Lab Invest       Date:  2021-12-21       Impact factor: 5.662

4.  Prognostic Value of ctDNA Mutation in Melanoma: A Meta-Analysis.

Authors:  Yang Zheng; Hongyan Sun; Lele Cong; Chenlu Liu; Qian Sun; Nan Wu; Xianling Cong
Journal:  J Oncol       Date:  2021-05-04       Impact factor: 4.375

5.  Circulating nuclear DNA structural features, origins, and complete size profile revealed by fragmentomics.

Authors:  Cynthia Sanchez; Benoit Roch; Thibault Mazard; Philippe Blache; Zahra Al Amir Dache; Brice Pastor; Ekaterina Pisareva; Rita Tanos; Alain R Thierry
Journal:  JCI Insight       Date:  2021-04-08

Review 6.  Use of Liquid Biopsy in the Care of Patients with Non-Small Cell Lung Cancer.

Authors:  Atocha Romero; Roberto Serna-Blasco; Virginia Calvo; Mariano Provencio
Journal:  Curr Treat Options Oncol       Date:  2021-08-23

7.  Characterization of Plasma Cell-Free DNA Integrity Using Droplet-Based Digital PCR: Toward the Development of Circulating Tumor DNA-Dedicated Assays.

Authors:  Geoffroy Poulet; Fanny Garlan; Sonia Garrigou; Eleonora Zonta; Leonor Benhaim; Marie-Jennifer Carrillon; Audrey Didelot; Delphine Le Corre; Claire Mulot; Philippe Nizard; Frederic Ginot; Audrey Boutonnet-Rodat; Helene Blons; Jean-Baptiste Bachet; Julien Taïeb; Aziz Zaanan; Vanna Geromel; Laurence Pellegrina; Pierre Laurent-Puig; Shu-Fang Wang-Renault; Valerie Taly
Journal:  Front Oncol       Date:  2021-05-06       Impact factor: 6.244

8.  Detection of EGFR Mutations in Plasma cfDNA and Paired CTCs of NSCLC Patients before and after Osimertinib Therapy Using Crystal Digital PCR.

Authors:  Aliki Ntzifa; Athanasios Kotsakis; Vassilis Georgoulias; Evi Lianidou
Journal:  Cancers (Basel)       Date:  2021-05-31       Impact factor: 6.639

Review 9.  cfDNA Sequencing: Technological Approaches and Bioinformatic Issues.

Authors:  Elodie Bohers; Pierre-Julien Viailly; Fabrice Jardin
Journal:  Pharmaceuticals (Basel)       Date:  2021-06-21

10.  Validating quantitative PCR assays for cfDNA detection without DNA extraction in exercising SLE patients.

Authors:  Elmo W I Neuberger; Alexandra Brahmer; Tobias Ehlert; Katrin Kluge; Keito F A Philippi; Simone C Boedecker; Julia Weinmann-Menke; Perikles Simon
Journal:  Sci Rep       Date:  2021-06-30       Impact factor: 4.379

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