Literature DB >> 30788784

Chemically Inducible Chromosomal Evolution (CIChE) for Multicopy Metabolic Pathway Engineering.

Aaron M Love1, Bradley W Biggs2, Keith E J Tyo2, Parayil Kumaran Ajikumar3.   

Abstract

Chemically inducible chromosomal evolution (CIChE) was developed for stable multicopy chromosomal integration of heterologous genes. In this technique, flanking an antibiotic selection marker and a gene of interest with identical regions of homology permits gene duplication via recA mediated homologous recombination. A strong selective pressure for gene duplication can be applied by increasing antibiotic concentration, and in a week's time one can create a set of strains with a wide range of cassette copy numbers (upward of 20×), which can be made stable by deletion of recA. Herein, we describe a generalized workflow for this methodology.

Entities:  

Keywords:  Chromosomal integration; Escherichia coli; Metabolic engineering; Molecular cloning; Synthetic biology; Tools

Mesh:

Substances:

Year:  2019        PMID: 30788784      PMCID: PMC7055959          DOI: 10.1007/978-1-4939-9142-6_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  7 in total

1.  Towards single-copy gene expression systems making gene cloning physiologically relevant: lambda InCh, a simple Escherichia coli plasmid-chromosome shuttle system.

Authors:  D Boyd; D S Weiss; J C Chen; J Beckwith
Journal:  J Bacteriol       Date:  2000-02       Impact factor: 3.490

2.  One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.

Authors:  K A Datsenko; B L Wanner
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

Review 3.  Multivariate modular metabolic engineering for pathway and strain optimization.

Authors:  Bradley Walters Biggs; Brecht De Paepe; Christine Nicole S Santos; Marjan De Mey; Parayil Kumaran Ajikumar
Journal:  Curr Opin Biotechnol       Date:  2014-06-11       Impact factor: 9.740

Review 4.  Biochemistry of homologous recombination in Escherichia coli.

Authors:  S C Kowalczykowski; D A Dixon; A K Eggleston; S D Lauder; W M Rehrauer
Journal:  Microbiol Rev       Date:  1994-09

5.  Stabilized gene duplication enables long-term selection-free heterologous pathway expression.

Authors:  Keith E J Tyo; Parayil Kumaran Ajikumar; Gregory Stephanopoulos
Journal:  Nat Biotechnol       Date:  2009-07-26       Impact factor: 54.908

6.  Molecular structure and enzymatic function of lycopene cyclase from the cyanobacterium Synechococcus sp strain PCC7942.

Authors:  F X Cunningham; Z Sun; D Chamovitz; J Hirschberg; E Gantt
Journal:  Plant Cell       Date:  1994-08       Impact factor: 11.277

7.  Chromosomal evolution of Escherichia coli for the efficient production of lycopene.

Authors:  Yun-Yan Chen; Hong-Jie Shen; Yan-Yan Cui; Shang-Guang Chen; Zhi-Ming Weng; Ming Zhao; Jian-Zhong Liu
Journal:  BMC Biotechnol       Date:  2013-01-28       Impact factor: 2.563

  7 in total
  1 in total

Review 1.  Application of combinatorial optimization strategies in synthetic biology.

Authors:  Gita Naseri; Mattheos A G Koffas
Journal:  Nat Commun       Date:  2020-05-15       Impact factor: 14.919

  1 in total

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