Literature DB >> 30779939

iNR-2L: A two-level sequence-based predictor developed via Chou's 5-steps rule and general PseAAC for identifying nuclear receptors and their families.

Muhammad Kabir1, Saeed Ahmad2, Muhammad Iqbal3, Maqsood Hayat4.   

Abstract

Nuclear receptor proteins (NRPs) perform a vital role in regulating gene expression. With the rapidity growth of NRPs in post-genomic era, it is highly recommendable to identify NRPs and their sub-families accurately from their primary sequences. Several conventional methods have been used for discrimination of NRPs and their sub-families, but did not achieve considerable results. In a sequel, a two-level new computational model "iNR-2 L" is developed. Two discrete methods namely: Dipeptide Composition and Tripeptide Composition were used to formulate NRPs sequences. Further, both the descriptor spaces were merged to construct hybrid space. Furthermore, feature selection technique minimum redundancy and maximum relevance was employed in order to select salient features as well as reduce the noise and redundancy. The experiential outcomes exhibited that the proposed model iNR-2 L achieved outstanding results. It is anticipated that the proposed computational model might be a practical and effective tool for academia and research community.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Dipeptide composition; Nuclear receptor proteins; SVM; Tripeptide composition; mRMR

Year:  2019        PMID: 30779939     DOI: 10.1016/j.ygeno.2019.02.006

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  7 in total

Review 1.  Some illuminating remarks on molecular genetics and genomics as well as drug development.

Authors:  Kuo-Chen Chou
Journal:  Mol Genet Genomics       Date:  2020-01-01       Impact factor: 3.291

2.  Computational Identification of Lysine Glutarylation Sites Using Positive-Unlabeled Learning.

Authors:  Zhe Ju; Shi-Yun Wang
Journal:  Curr Genomics       Date:  2020-04       Impact factor: 2.236

3.  Predicting Cell Wall Lytic Enzymes Using Combined Features.

Authors:  Xiao-Yang Jing; Feng-Min Li
Journal:  Front Bioeng Biotechnol       Date:  2021-01-06

4.  Use of Chou's 5-steps rule to predict the subcellular localization of gram-negative and gram-positive bacterial proteins by multi-label learning based on gene ontology annotation and profile alignment.

Authors:  Hafida Bouziane; Abdallah Chouarfia
Journal:  J Integr Bioinform       Date:  2020-06-29

5.  Characterization of the relationship between FLI1 and immune infiltrate level in tumour immune microenvironment for breast cancer.

Authors:  Shiyuan Wang; Yakun Wang; Chunlu Yu; Yiyin Cao; Yao Yu; Yi Pan; Dongqing Su; Qianzi Lu; Wuritu Yang; Yongchun Zuo; Lei Yang
Journal:  J Cell Mol Med       Date:  2020-04-05       Impact factor: 5.310

6.  iCrotoK-PseAAC: Identify lysine crotonylation sites by blending position relative statistical features according to the Chou's 5-step rule.

Authors:  Sharaf Jameel Malebary; Muhammad Safi Ur Rehman; Yaser Daanial Khan
Journal:  PLoS One       Date:  2019-11-21       Impact factor: 3.240

7.  Using Chou's 5-steps rule to study pharmacophore-based virtual screening of SARS-CoV-2 Mpro inhibitors.

Authors:  Hemlata Pundir; Tanuja Joshi; Tushar Joshi; Priyanka Sharma; Shalini Mathpal; Subhash Chandra; Sushma Tamta
Journal:  Mol Divers       Date:  2020-10-20       Impact factor: 3.364

  7 in total

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