| Literature DB >> 30779869 |
Eimear M Nic Lughadha1, Vanessa Graziele Staggemeier1,2,3, Thais N C Vasconcelos1,4, Barnaby E Walker1, Cátia Canteiro1, Eve J Lucas1.
Abstract
The value of natural history collections for conservation science research is increasingly recognized, despite their well-documented limitations in terms of taxonomic, geographic, and temporal coverage. Specimen-based analyses are particularly important for tropical plant groups for which field observations are scarce and potentially unreliable due to high levels of diversity-amplifying identification challenges. Specimen databases curated by specialists are rich sources of authoritatively identified, georeferenced occurrence data, and such data are urgently needed for large genera. We compared entries in a monographic database for the large Neotropical genus Myrcia in 2007 and 2017. We classified and quantified differences in specimen records over this decade and determined the potential impact of these changes on conservation assessments. We distinguished misidentifications from changes due to taxonomic remodeling and considered the effects of adding specimens and georeferences. We calculated the potential impact of each change on estimates of extent of occurrence (EOO), the most frequently used metric in extinction-risk assessments of tropical plants. We examined whether particular specimen changes were associated with species for which changes in EOO over the decade were large enough to change their conservation category. Corrections to specimens previously misidentified or lacking georeferences were overrepresented in such species, whereas changes associated with taxonomic remodeling (lumping and splitting) were underrepresented. Among species present in both years, transitions to less threatened status outnumbered those to more threatened (8% vs 3%, respectively). Species previously deemed data deficient transitioned to threatened status more often than to not threatened (10% vs 7%, respectively). Conservation scientists risk reaching unreliable conclusions if they use specimen databases that are not actively curated to reflect changing knowledge.Entities:
Keywords: IUCN Red List; Lista Roja UICN; extensión de la distribución; extent of occurrence; extinction risk; georeferenced; georeferenciación; herbario; herbarium; identificación errónea; misidentification; monografía; monography; remodelación taxonómica; taxonomic remodeling
Year: 2019 PMID: 30779869 PMCID: PMC6850456 DOI: 10.1111/cobi.13289
Source DB: PubMed Journal: Conserv Biol ISSN: 0888-8892 Impact factor: 6.560
Classification of changes to specimen records in the Myrcia database
| Major change | Minor change | Description | Short name | Number of changed records |
|---|---|---|---|---|
| Additions | new specimens added to the database | new specimens | 5663 | |
| Name change | nomenclatural | species name changed but circumscription did not | nomenclatural | 2627 |
| taxonomic remodeling | specimens previously considered to represent a distinct species which was formally described now recognized as and included in a species described earlier | lumped | 319 | |
| taxonomic remodeling | subset of specimens from a species recognized as a distinct species not previously recognized in the database | split | 111 | |
| corrections to identifications | specimen misidentified and then corrected; represents either addition to the species that gains the specimen or subtraction from the species that no longer includes the specimen | correction in correction out | 364 | |
| rank | specimen originally identified to genus but since fully determined to species | upgraded to species | 420 | |
| specimen originally misidentified to species level, but level of certainty decreased and since identified only to genus | downgraded to genus | 25 | ||
| Geography | new coordinates | specimen previously lacking georeference has coordinates | new coordinates | 225 |
| corrected coordinates | specimen with coordinates has new coordinates to improve accuracy or precision | corrected coordinates | 78 |
*See Supporting Information for a breakdown of changes to records that altered extent of occurrence.
Figure 1The number of Myrcia (a, b) specimens and (d, e) species represented in the database in 2007 and 2017 per 10,000‐km2 grid cell and the difference in (c) specimens and (f) species.
Figure 2(a) The number of Myrcia species assigned to each conservation category by preliminary assessment based on calculations of extent of occurrence with locality data for each species from 2007 and 2017 (*, significant change) and (b) changes in preliminary assessment results based on locality data from 2007 and 2017 (CR, critically endangered; EN, endangered; VU, vulnerable; NT, near threatened; LC, least concern; DD, data deficient). Changes are significant if 0 is outside the 95% CI of the change (calculated by Bayesian parameter estimation).
Figure 3Comparison of the extent of occurrence (EOO) (km2) in 2007 and 2017 for all Myrcia species present in in the database in both years. Both axes are plotted on the log (x+1) scale.
Figure 4(a) Proportion of each type of specimen change associated with species that did and did not change preliminary conservation category between 2007 and 2017 (*, significant difference if 0 fell outside the 95% CI of the change [calculated by Bayesian parameter estimation]; corrected out, subtraction of a specimen from a species due to correction of misidentification; corrected in, addition of a specimen from a species due to correction of misidentification). (b) Mean change in extent of occurrence (EOO) for each type of specimen change (calculated as the change in EOO when only the single specimen change in question is in the locality data from 2007; whiskers, SE contribution for each specimen type).