Literature DB >> 30779109

The identification of new biomarkers for bladder cancer: A study based on TCGA and GEO datasets.

Junyi Hu1, Lijie Zhou1, Zhengshuai Song1, Ming Xiong1, Youpeng Zhang1, Yu Yang2, Ke Chen1, Zhaohui Chen1.   

Abstract

Bladder cancer (BC) is one of the most common neoplastic diseases worldwide. With the highest recurrence rate among all cancers, treatment of BC only improved a little in the last 30 years. Available biomarkers are not sensitive enough for the diagnosis of BC, whereas the standard diagnostic method, cystoscopy, is an invasive test and expensive. Hence, seeking new biomarkers of BC is urgent and challenging. With that order, we screened the overlapped differentially expressed genes (DEGs) of GSE13507 and TCGA BLCA datasets. Subsequent protein-protein interactions network analysis recognized the hub genes among these DEGs. Further functional analysis including Gene Ontology and KEGG pathway analysis and gene set enrichment analysis were processed to investigate the role of these genes and potential underlying mechanisms in BC. Kaplan-Meier analysis and Cox hazard ratio analysis were carried out to clarify the diagnostic and prognostic role of these genes. In conclusion, our present study demonstrated that ACTA2, CDC20, MYH11, TGFB3, TPM1, VIM, and DCN are all potential diagnostic biomarkers for BC. And may also be potential treatment targets for clinical implication in the future.
© 2019 Wiley Periodicals, Inc.

Entities:  

Keywords:  bioinformatics; biomarker; bladder cancer (BC); diagnostic; prognostic markers

Year:  2019        PMID: 30779109     DOI: 10.1002/jcp.28208

Source DB:  PubMed          Journal:  J Cell Physiol        ISSN: 0021-9541            Impact factor:   6.384


  15 in total

1.  Decorin inhibits proliferation and metastasis in human bladder cancer cells by upregulating P21.

Authors:  Hongjie Chen; Ziyi Wang; Ninggang Yang; Jun Zhang; Zhong Liang
Journal:  Medicine (Baltimore)       Date:  2022-07-01       Impact factor: 1.817

2.  Tropomyosin Is Potential Markers for the Diagnosis and Prognosis of Bladder Cancer.

Authors:  Yunkun Yan; Jianchang Li; Mushi Ye; Zhuo Li; Sining Li
Journal:  Dis Markers       Date:  2022-06-13       Impact factor: 3.464

3.  Identification of hub genes predicting the development of prostate cancer from benign prostate hyperplasia and analyzing their clinical value in prostate cancer by bioinformatic analysis.

Authors:  Xi Chen; Junjie Ma; Chengdang Xu; Licheng Wang; Yicong Yao; Xinan Wang; Tong Zi; Cuidong Bian; Denglong Wu; Gang Wu
Journal:  Discov Oncol       Date:  2022-06-30

4.  Integrated analysis highlights multiple long non‑coding RNAs and their potential roles in the progression of human esophageal squamous cell carcinoma.

Authors:  Cheng-Yun Li; Wen-Wen Zhang; Ji-Lian Xiang; Xing-Hua Wang; Jun-Ling Wang; Jin Li
Journal:  Oncol Rep       Date:  2019-10-17       Impact factor: 3.906

5.  Clinical and prognostic significance of MYH11 in lung cancer.

Authors:  Meng-Jun Nie; Xiao-Ting Pan; He-Yun Tao; Meng-Jun Xu; Shen-Lin Liu; Wei Sun; Jian Wu; Xi Zou
Journal:  Oncol Lett       Date:  2020-03-27       Impact factor: 2.967

6.  Identification of Key Biomarkers in Bladder Cancer: Evidence from a Bioinformatics Analysis.

Authors:  Chuan Zhang; Mandy Berndt-Paetz; Jochen Neuhaus
Journal:  Diagnostics (Basel)       Date:  2020-01-24

7.  Single-cell RNA sequencing highlights the role of inflammatory cancer-associated fibroblasts in bladder urothelial carcinoma.

Authors:  Zhaohui Chen; Lijie Zhou; Lilong Liu; Yaxin Hou; Ming Xiong; Yu Yang; Junyi Hu; Ke Chen
Journal:  Nat Commun       Date:  2020-10-08       Impact factor: 14.919

8.  Identification of Key Genes in Lung Adenocarcinoma and Establishment of Prognostic Mode.

Authors:  Zhou Jiawei; Mu Min; Xing Yingru; Zhang Xin; Li Danting; Liu Yafeng; Xie Jun; Hu Wangfa; Zhang Lijun; Wu Jing; Hu Dong
Journal:  Front Mol Biosci       Date:  2020-10-27

9.  Identification of prognostic biomarkers associated with stromal cell infiltration in muscle-invasive bladder cancer by bioinformatics analyses.

Authors:  Pan Li; Jinlong Cao; Jianpeng Li; Zhiqiang Yao; Dali Han; Lijun Ying; Zhiping Wang; Junqiang Tian
Journal:  Cancer Med       Date:  2020-08-12       Impact factor: 4.452

10.  Non-SMC condensin I complex subunit H (NCAPH), a regulator of cell cycle, predicts poor prognosis in lung adenocarcinoma patients: a study mainly based on TCGA and GEO database.

Authors:  Wei Zhou; Jia Hu; Jun Zhao
Journal:  Transl Cancer Res       Date:  2020-12       Impact factor: 1.241

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