Literature DB >> 30778580

The minimum information required for a glycomics experiment (MIRAGE) project: LC guidelines.

Matthew P Campbell1, Jodie L Abrahams1, Erdmann Rapp2, Weston B Struwe3, Catherine E Costello4, Milos Novotny5, Rene Ranzinger6, William S York6, Daniel Kolarich1,7, Pauline M Rudd8, Carsten Kettner9.   

Abstract

The Minimum Information Required for a Glycomics Experiment (MIRAGE) is an initiative created by experts in the fields of glycobiology, glycoanalytics and glycoinformatics to design guidelines that improve the reporting and reproducibility of glycoanalytical methods. Previously, the MIRAGE Commission has published guidelines for describing sample preparation methods and the reporting of glycan array and mass spectrometry techniques and data collections. Here, we present the first version of guidelines that aim to improve the quality of the reporting of liquid chromatography (LC) glycan data in the scientific literature. These guidelines cover all aspects of instrument setup and modality of data handling and manipulation and is cross-linked with other MIRAGE recommendations. The most recent version of the MIRAGE-LC guidelines is freely available at the MIRAGE project website doi:10.3762/mirage.4.
© The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  data sharing; glycomics; guidelines; liquid chromatography

Year:  2019        PMID: 30778580     DOI: 10.1093/glycob/cwz009

Source DB:  PubMed          Journal:  Glycobiology        ISSN: 0959-6658            Impact factor:   4.313


  11 in total

Review 1.  Glycomics and glycoproteomics of viruses: Mass spectrometry applications and insights toward structure-function relationships.

Authors:  John F Cipollo; Lisa M Parsons
Journal:  Mass Spectrom Rev       Date:  2020-04-29       Impact factor: 10.946

2.  Standardization of PGC-LC-MS-based glycomics for sample specific glycotyping.

Authors:  Christopher Ashwood; Brian Pratt; Brendan X MacLean; Rebekah L Gundry; Nicolle H Packer
Journal:  Analyst       Date:  2019-05-08       Impact factor: 4.616

3.  Desalting Paper Spay Mass Spectrometry (DPS-MS) for Rapid Detection of Glycans and Glycoconjugates.

Authors:  Kai-Yuan Chiu; Qi Wang; Harsha P Gunawardena; Michael Held; Ahmed Faik; Hao Chen
Journal:  Int J Mass Spectrom       Date:  2021-08-28       Impact factor: 1.986

Review 4.  Mass Spectrometry-Based Techniques to Elucidate the Sugar Code.

Authors:  Márkó Grabarics; Maike Lettow; Carla Kirschbaum; Kim Greis; Christian Manz; Kevin Pagel
Journal:  Chem Rev       Date:  2021-09-07       Impact factor: 72.087

5.  Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project.

Authors:  Gilbert S Omenn; Lydie Lane; Christopher M Overall; Young-Ki Paik; Ileana M Cristea; Fernando J Corrales; Cecilia Lindskog; Susan Weintraub; Michael H A Roehrl; Siqi Liu; Nuno Bandeira; Sudhir Srivastava; Yu-Ju Chen; Ruedi Aebersold; Robert L Moritz; Eric W Deutsch
Journal:  J Proteome Res       Date:  2021-10-20       Impact factor: 5.370

Review 6.  Big-Data Glycomics: Tools to Connect Glycan Biosynthesis to Extracellular Communication.

Authors:  Benjamin P Kellman; Nathan E Lewis
Journal:  Trends Biochem Sci       Date:  2020-12-18       Impact factor: 13.807

Review 7.  Towards a standardized bioinformatics infrastructure for N- and O-glycomics.

Authors:  Miguel A Rojas-Macias; Julien Mariethoz; Peter Andersson; Chunsheng Jin; Vignesh Venkatakrishnan; Nobuyuki P Aoki; Daisuke Shinmachi; Christopher Ashwood; Katarina Madunic; Tao Zhang; Rebecca L Miller; Oliver Horlacher; Weston B Struwe; Yu Watanabe; Shujiro Okuda; Fredrik Levander; Daniel Kolarich; Pauline M Rudd; Manfred Wuhrer; Carsten Kettner; Nicolle H Packer; Kiyoko F Aoki-Kinoshita; Frédérique Lisacek; Niclas G Karlsson
Journal:  Nat Commun       Date:  2019-07-22       Impact factor: 14.919

Review 8.  Natural and Synthetic Sialylated Glycan Microarrays and Their Applications.

Authors:  Alyssa M McQuillan; Lauren Byrd-Leotis; Jamie Heimburg-Molinaro; Richard D Cummings
Journal:  Front Mol Biosci       Date:  2019-09-13

Review 9.  Esophageal, gastric and colorectal cancers: Looking beyond classical serological biomarkers towards glycoproteomics-assisted precision oncology.

Authors:  Elisabete Fernandes; Janine Sores; Sofia Cotton; Andreia Peixoto; Dylan Ferreira; Rui Freitas; Celso A Reis; Lúcio Lara Santos; José Alexandre Ferreira
Journal:  Theranostics       Date:  2020-03-31       Impact factor: 11.556

Review 10.  The Hitchhiker's guide to glycoproteomics.

Authors:  Tiago Oliveira; Morten Thaysen-Andersen; Nicolle H Packer; Daniel Kolarich
Journal:  Biochem Soc Trans       Date:  2021-08-27       Impact factor: 5.407

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