Literature DB >> 30775966

Aggregatilinea lenta gen. nov., sp. nov., a slow-growing, facultatively anaerobic bacterium isolated from subseafloor sediment, and proposal of the new order Aggregatilineales ord. nov. within the class Anaerolineae of the phylum Chloroflexi.

Nozomi Nakahara1,2, Masaru K Nobu3, Yoshihiro Takaki2,4, Masayuki Miyazaki2, Eiji Tasumi2, Sanae Sakai2, Miyuki Ogawara2, Naoko Yoshida5, Hideyuki Tamaki3, Yuko Yamanaka2, Arata Katayama6, Takashi Yamaguchi1, Ken Takai2, Hiroyuki Imachi2.   

Abstract

A novel slow-growing, facultatively anaerobic, filamentous bacterium, strain MO-CFX2T, was isolated from a methanogenic microbial community in a continuous-flow bioreactor that was established from subseafloor sediment collected off the Shimokita Peninsula of Japan. Cells were multicellular filamentous, non-motile and Gram-stain-negative. The filaments were generally more than 20 µm (up to approximately 200 µm) long and 0.5-0.6 µm wide. Cells possessed pili-like structures on the cell surface and a multilayer structure in the cytoplasm. Growth of the strain was observed at 20-37 °C (optimum, 30 °C), pH 5.5-8.0 (pH 6.5-7.0), and 0-30 g l-1 NaCl (5 g l-1 NaCl). Under optimum growth conditions, doubling time and maximum cell density were estimated to be approximately 19 days and ~105 cells ml-1, respectively. Strain MO-CFX2T grew chemoorganotrophically on a limited range of organic substrates in anaerobic conditions. The major cellular fatty acids were saturated C16 : 0 (47.9 %) and C18 : 0 (36.9 %), and unsaturated C18 : 1ω9c (6.0 %) and C16 : 1ω7 (5.1 %). The G+C content of genomic DNA was 63.2 mol%. 16S rRNA gene-based phylogenetic analysis showed that strain MO-CFX2T shares a notably low sequence identity with its closest relatives, which were Thermanaerothrix daxensis GNS-1T and Thermomarinilinea lacunifontana SW7T (both 85.8 % sequence identity). Based on these phenotypic and genomic properties, we propose the name Aggregatilinea lenta gen. nov., sp. nov. for strain MO-CFX2T (=KCTC 15625T, =JCM 32065T). In addition, we also propose the associated family and order as Aggregatilineaceae fam. nov. and Aggregatilineales ord. nov., respectively.

Entities:  

Keywords:  Aggregatilinea lenta; Anaerolineae; Chloroflexi; novel species; subseafloor sediment

Mesh:

Substances:

Year:  2019        PMID: 30775966     DOI: 10.1099/ijsem.0.003291

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  7 in total

Review 1.  Cultivation of previously uncultured microorganisms with a continuous-flow down-flow hanging sponge (DHS) bioreactor, using a syntrophic archaeon culture obtained from deep marine sediment as a case study.

Authors:  Hiroyuki Imachi; Masaru K Nobu; Masayuki Miyazaki; Eiji Tasumi; Yumi Saito; Sanae Sakai; Miyuki Ogawara; Akiyoshi Ohashi; Ken Takai
Journal:  Nat Protoc       Date:  2022-09-14       Impact factor: 17.021

2.  Cultivation Renaissance in the Post-Metagenomics Era: Combining the New and Old.

Authors:  Hideyuki Tamaki
Journal:  Microbes Environ       Date:  2019       Impact factor: 2.912

3.  Global diversity of microbial communities in marine sediment.

Authors:  Tatsuhiko Hoshino; Hideyuki Doi; Go-Ichiro Uramoto; Lars Wörmer; Rishi R Adhikari; Nan Xiao; Yuki Morono; Steven D'Hondt; Kai-Uwe Hinrichs; Fumio Inagaki
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-19       Impact factor: 11.205

4.  Iocasia fonsfrigidae NS-1 gen. nov., sp. nov., a Novel Deep-Sea Bacterium Possessing Diverse Carbohydrate Metabolic Pathways.

Authors:  Jing Zhang; Yuechao Zhang; Rui Liu; Ruining Cai; Fanghua Liu; Chaomin Sun
Journal:  Front Microbiol       Date:  2021-11-24       Impact factor: 5.640

5.  Characterization of the First Cultured Representative of "Candidatus Thermofonsia" Clade 2 within Chloroflexi Reveals Its Phototrophic Lifestyle.

Authors:  Rikuan Zheng; Ruining Cai; Chong Wang; Rui Liu; Chaomin Sun
Journal:  mBio       Date:  2022-03-01       Impact factor: 7.786

Review 6.  Nitrate- and Nitrite-Sensing Histidine Kinases: Function, Structure, and Natural Diversity.

Authors:  Ivan Gushchin; Vladimir A Aleksenko; Philipp Orekhov; Ivan M Goncharov; Vera V Nazarenko; Oleg Semenov; Alina Remeeva; Valentin Gordeliy
Journal:  Int J Mol Sci       Date:  2021-05-31       Impact factor: 5.923

7.  Isolation of an archaeon at the prokaryote-eukaryote interface.

Authors:  Hiroyuki Imachi; Masaru K Nobu; Nozomi Nakahara; Yuki Morono; Miyuki Ogawara; Yoshihiro Takaki; Yoshinori Takano; Katsuyuki Uematsu; Tetsuro Ikuta; Motoo Ito; Yohei Matsui; Masayuki Miyazaki; Kazuyoshi Murata; Yumi Saito; Sanae Sakai; Chihong Song; Eiji Tasumi; Yuko Yamanaka; Takashi Yamaguchi; Yoichi Kamagata; Hideyuki Tamaki; Ken Takai
Journal:  Nature       Date:  2020-01-15       Impact factor: 69.504

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.