| Literature DB >> 30774960 |
Lien Wang1, Grace Lee1, Amy Shih1, Chester Kuei1, Diane Nepomuceno1, Michelle Wennerholm1, Frances Fan1,2, Jiejun Wu1, Pascal Bonaventure1, Timothy W Lovenberg1, Changlu Liu1.
Abstract
GPR139 is a Gq-coupled receptor activated by the essential amino acids L-tryptophan (L-Trp) and L-phenylalanine (L-Phe). We carried out mutagenesis studies of the human GPR139 receptor to identify the critical structural motifs required for GPR139 activation. We applied site-directed and high throughput random mutagenesis approaches using a double addition normalization strategy to identify novel GPR139 sequences coding receptors that have altered sensitivity to endogenous ligands. This approach resulted in GPR139 clones with gain-of-function, reduction-of-function or loss-of-function mutations. The agonist pharmacology of these mutant receptors was characterized and compared to wild-type receptor using calcium mobilization, radioligand binding, and protein expression assays. The structure-activity data were incorporated into a homology model which highlights that many of the gain-of-function mutations are either in or immediately adjacent to the purported orthosteric ligand binding site, whereas the loss-of-function mutations were largely in the intracellular G-protein binding area or were disrupters of the helix integrity. There were also some reduction-of-function mutations in the orthosteric ligand binding site. These findings may not only facilitate the rational design of novel agonists and antagonists of GPR139, but also may guide the design of transgenic animal models to study the physiological function of GPR139.Entities:
Keywords: GPR139; calcium mobilization assay; gain of function; homology model; random mutagenesis; reduction of function
Mesh:
Substances:
Year: 2019 PMID: 30774960 PMCID: PMC6367278 DOI: 10.1002/prp2.466
Source DB: PubMed Journal: Pharmacol Res Perspect ISSN: 2052-1707
Figure 1Illustration model of double additions and normalization strategy in calcium mobilization assay. (A) The EC 20 dose of agonist and saturation dose of agonist were defined by GPR139 wild‐type dose response curve (B) Response curve of candidate mutation clones under the stimulation of wild‐type EC 20 dose of agonist. (C) Response curve of candidate mutation clone under the stimulation of a wild‐type saturation dose of agonist. (D) Response curve of candidate mutation clone under the stimulation of double additions of first EC 20 dose and then saturation dose of agonist. It is important to note that, due to different degree of receptor desensitization caused by the first addition of agonists, the response stimulated by the second addition with saturating concentration of agonists, will be lower than the response stimulated by the same saturating agonist without the first addition
Human GPR139 receptor gain‐of‐function random mutations summary
| Section | Mutation | Location | L‐Phe | L‐Trp | TC‐O 9311 | JNJ‐63533054 | EC50 fold change | Total protein | Surface protein | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EC50 (μmol L−1) |
| EC50 (μmol L−1) |
| EC50 (n mol L−1) |
| EC50 (nmol L−1) |
| L‐Phe | L‐Trp | TC‐O 9311 | JNJ‐3054 | %WT | %WT | |||
| Single Point Mutations | V191A | TM5 | 15 | 65 | 14 | 62 | 31 | 61 | 67 | 59 | 0.15 | 0.16 | 0.81 | 2.86 | 73 | 57 |
| S267P | TM7 | 16 | 34 | 28 | 32 | 70 | 27 | 16 | 29 | 0.15 | 0.32 | 1.87 | 0.67 | 65 | 56 | |
| V76A | TM2 | 18 | 176 | 38 | 232 | 18 | 192 | 11 | 199 | 0.17 | 0.42 | 0.48 | 0.46 | 172 | 165 | |
| I116T | TM3 | 22 | 204 | 80 | 236 | 14 | 218 | 8 | 180 | 0.21 | 0.90 | 0.36 | 0.34 | 163 | 136 | |
| F287Y | TM7 | 32 | 54 | 31 | 48 | 28 | 48 | 22 | 48 | 0.32 | 0.35 | 0.74 | 0.94 | 55 | 53 | |
| C23R | N‐ter | 32 | 107 | 84 | 122 | 33 | 112 | 12 | 129 | 0.32 | 0.95 | 0.88 | 0.51 | 127 | 119 | |
| N93D | 1st ECL | 39 | 241 | 61 | 264 | 22 | 233 | 8 | 235 | 0.38 | 0.68 | 0.59 | 0.33 | 154 | 156 | |
| Multi Points Mutations | L249F, S267P | TM6, TM7 | 18 | 78 | 22 | 63 | 97 | 58 | 25 | 72 | 0.17 | 0.24 | 2.57 | 1.06 | 60 | 60 |
| I116T, N259S, D343G | TM3, 3rd ECL, C‐ter | 25 | 33 | 32 | 28 | 32 | 30 | 42 | 29 | 0.25 | 0.36 | 0.84 | 1.78 | 40 | 39 | |
| C23R, F78L | N‐ter, TM2 | 26 | 60 | 34 | 52 | 32 | 56 | 13 | 58 | 0.26 | 0.39 | 0.85 | 0.55 | 49 | 47 | |
| D84N, N93D | TM2, 1st ECL | 28 | 46 | 66 | 42 | 18 | 38 | 19 | 41 | 0.28 | 0.74 | 0.49 | 0.83 | 53 | 49 | |
| P19L, V191A | N‐Ter, TM5 | 31 | 49 | 21 | 46 | 122 | 47 | 87 | 46 | 0.30 | 0.23 | 3.25 | 3.72 | 60 | 60 | |
| D84G, K336Q | TM2, C‐ter | 38 | 68 | 29 | 68 | 43 | 68 | 17 | 73 | 0.38 | 0.32 | 1.16 | 0.75 | 102 | 95 | |
| V76A, I201V | TM2, TM5 | 39 | 72 | 38 | 71 | 56 | 67 | 36 | 71 | 0.39 | 0.43 | 1.48 | 1.52 | 72 | 69 | |
| V191A, I229T | TM5, TM6 | 40 | 27 | 13 | 23 | 93 | 27 | 39 | 25 | 0.40 | 0.15 | 2.48 | 1.68 | 45 | 37 | |
| T190A, P329Q | TM5, C‐ter | 45 | 56 | 32 | 48 | 103 | 56 | 33 | 59 | 0.45 | 0.36 | 2.75 | 1.42 | 103 | 97 | |
| WT | 101 | 100 | 89 | 100 | 38 | 100 | 23 | 100 | 1.00 | 1.00 | 1.00 | 1.00 | 100 | 100 | ||
Agonist potency values were determined using a calcium mobilization assay in HEK 293 cells transiently transfected with mutated or wild‐type human GPR139. Within each section, the table is listed in an order from the most to the least potent mutations, in terms of the EC50 fold change to L‐Phe and then L‐Trp, with an arbitrary cut off value of 0.5. EC50 values are means from one experiment with duplicate or triplicate measurements. E max values are expressed as the percentage of the response elicited by the wild‐type human GPR139. EC50 fold changes are expressed as a ratio, that EC50 of agonist of the mutation to the wild type. Total and surface protein expression values are expressed as the percentage of the mean absorbance value read against 450 nm of the wild‐type human GPR139, from one experiment with duplicate or triplicate measurements.
C‐Ter, C‐terminus; ECL, extracellular loop; ICL, intercellular loop; N‐Ter, N‐terminus; TM, transmembrane domain.
Representative human GPR139 receptor gain‐of‐function random mutations radioligand binding assays summary
| Mutation |
|
|
|
|
|
|
| |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| L‐Phe | L‐Trp | TC‐O 9311 | JNJ‐3054 | L‐Phe | L‐Trp | TCO‐9311 | JNJ‐3054 | |||||
| V191A | 3 ± 1 | 8061 ± 2703 | 0.23 | 2.24 | 643 ± 320 | 1072 ± 465 | 56 ± 11 | 19 ± 8 | 0.73 | 1.08 | 0.53 | 0.56 |
| S267P | 11 ± 5 | 1011 ± 531 | 0.83 | 0.27 | 554 ± 140 | 682 ± 171 | 322 ± 164 | 46 ± 15 | 0.72 | 0.74 | 2.85 | 1.43 |
| V76A | 22 ± 11 | 6713 ± 1721 | 1.63 | 1.93 | 360 ± 121 | 626 ± 78 | 44 ± 16 | 43 ± 17 | 0.41 | 0.70 | 0.39 | 1.29 |
| I116T | 5 ± 3 | 3170 ± 1442 | 0.38 | 0.86 | 875 ± 146 | 1015 ± 215 | 56 ± 18 | 26 ± 10 | 0.98 | 1.11 | 0.50 | 0.81 |
| WT | 13 ± 3 | 3674 ± 1554 | 1.00 | 1.00 | 990 ± 426 | 1019 ± 364 | 110 ± 23 | 37 ± 24 | 1.00 | 1.00 | 1.00 | 1.00 |
Concentration binding of [3H]‐JNJ‐63533054 were determined using a saturation binding assay in HEK293 cells transiently transfected with mutated or wild‐type human GPR139. K d (nmol L−1) and B max (fg/mg protein) values are means ± SD (n = 3). K d and B max fold changes are expressed as a ratio, that EC50 of agonist of the mutation to the wild type. Competition of [3H]‐JNJ63533054 binding by L‐Phe, L‐Trp, TC‐O 9311, and JNJ‐63533054 were determined using a competitive inhibition assay in COS‐7 cells transiently transfected with mutated or wild‐type human GPR139 wild‐type human GPR139. Inhibition equilibrium constants (K i) values are means ± SD (n = 3). K i fold changes are expressed as a ratio, that EC50 of agonist of the mutation to the wild type.
Figure 2Dose response curves of the representative human GPR139 gain‐of‐function mutants to endogenous ligands (A) L‐Phe and (B) L‐Trp in calcium mobilization assay. Data shown as means ± SD with triplicate measurements for each point (n = 3)
Human GPR139 receptor reduction‐of‐function random mutations summary
| Section | Mutation | Location | L‐Phe | L‐Trp | TC‐O 9311 | JNJ‐63533054 | EC50 Fold Change | Total Protein | Surface Protein | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EC50 (μmol L−1) |
| EC50 (μmol L−1) |
| EC50 (n mol L−1) |
| EC50 (n mol L−1) | Emax (%WT) | L‐Phe | L‐Trp | TC‐O 9311 | JNJ‐3054 | %WT | %WT | |||
| Single Point Mutations | C286R | TM7 | ND | N/A | ND | N/A | 450 | 21 | 50 | 24 | N/A | N/A | 14.38 | 7.21 | 51 | 46 |
| K225E | TM6 | ND | N/A | ND | N/A | 179 | 111 | 31 | 118 | N/A | N/A | 5.71 | 4.39 | 22 | 40 | |
| Y33C | TM1 | 1695 | 83 | 623 | 57 | 160 | 79 | 55 | 76 | 21.61 | 10.71 | 5.11 | 7.87 | 44 | 65 | |
| T278I | TM7 | 1205 | 45 | 1356 | 35 | 225 | 27 | 27 | 46 | 15.36 | 23.30 | 7.18 | 3.80 | 44 | 51 | |
| L86P | TM2 | 725 | 11 | 451 | 15 | 116 | 22 | 57 | 90 | 9.24 | 7.75 | 3.69 | 8.19 | 22 | 28 | |
| L41S | TM1 | 539 | 121 | 241 | 104 | 145 | 133 | 45 | 132 | 6.88 | 4.15 | 4.62 | 6.40 | 14 | 23 | |
| N203D | TM5 | 497 | 136 | 416 | 112 | 74 | 154 | 19 | 151 | 6.34 | 7.15 | 2.36 | 2.72 | 10 | 17 | |
| L249H | TM6 | 491 | 58 | 336 | 32 | 89 | 54 | 24 | 68 | 6.26 | 5.77 | 2.83 | 3.49 | 26 | 38 | |
| F231S | TM6 | 386 | 29 | 416 | 28 | 111 | 29 | 31 | 32 | 4.92 | 7.15 | 3.53 | 4.42 | 21 | 32 | |
| S62P | TM2 | 297 | 92 | 195 | 82 | 62 | 95 | 23 | 237 | 3.78 | 3.36 | 1.99 | 3.25 | 20 | 31 | |
| L249P | TM6 | 202 | 43 | 190 | 42 | 87 | 42 | 23 | 132 | 2.57 | 3.27 | 2.78 | 3.26 | 53 | 37 | |
| Multi Points Mutations | I128N F237S | TM3, TM6 | ND | N/A | 2188 | 59 | 339 | 66 | 56 | 61 | N/A | 37.59 | 10.83 | 8.03 | 21 | 31 |
| I205T K225E | TM5, ICL3 | ND | N/A | 1617 | 77 | 110 | 89 | 24 | 98 | N/A | 27.78 | 3.51 | 3.46 | 32 | 50 | |
| K147E F283S | ICL2, TM7 | 1223 | 58 | 530 | 42 | 465 | 64 | 57 | 71 | 15.59 | 9.11 | 14.84 | 8.08 | 14 | 25 | |
| M96V Y136C | ECL1, ICL2 | 572 | 47 | 283 | 50 | 80 | 45 | 20 | 50 | 7.29 | 4.87 | 2.54 | 2.86 | 33 | 48 | |
| R57G I288V | ICL1, C‐Ter | 523 | 49 | 330 | 48 | 340 | 67 | 51 | 279 | 6.66 | 5.66 | 10.86 | 7.30 | 42 | 44 | |
| V148A I229T | TM4, TM6 | 520 | 54 | 300 | 50 | 155 | 53 | 24 | 54 | 6.63 | 5.15 | 4.96 | 3.43 | 21 | 37 | |
| I45V S222F | TM1, ICL3 | 435 | 136 | 155 | 141 | 55 | 143 | 10 | 154 | 5.55 | 2.66 | 1.74 | 1.45 | 25 | 39 | |
| I288N A302T | C‐Ter, C‐Ter | 333 | 60 | 232 | 48 | 147 | 64 | 32 | 73 | 4.25 | 3.99 | 4.71 | 4.53 | 25 | 34 | |
| M96V F282Y | ECL1, TM7 | 228 | 44 | 115 | 38 | 87 | 53 | 23 | 52 | 2.90 | 1.97 | 2.78 | 3.26 | 30 | 42 | |
| I45T T226A | TM1, ICL3 | 164 | 53 | 102 | 48 | 82 | 53 | 16 | 51 | 2.09 | 1.76 | 2.62 | 2.28 | 28 | 37 | |
| WT | 78 | 100 | 58 | 100 | 31 | 100 | 7 | 100 | 1.00 | 1.00 | 1.00 | 1.00 | 100 | 100 | ||
Agonist potency values were determined using a calcium mobilization assay in HEK 293 cells transiently transfected with mutated or wild‐type human GPR139. Within each section, the table is listed in an order from the most to the least potent mutations, to the EC50 fold change to L‐Phe and then L‐Trp, with an arbitrary cut off value of 2.0. EC50 values are means from one experiment with duplicate or triplicate measurements. E max values are expressed as the percentage of the response elicited by the wild‐type human GPR139. EC50 fold changes are expressed as a ratio, that EC50 of agonist of the mutation to the wild type. Total and surface protein expression values are expressed as the percentage of the mean absorbance value read against 450 nm of the wild‐type human GPR139, from one experiment with duplicate or triplicate measurements.
C‐Ter, C‐terminus; ECL, extracellular loop; ICL, intercellular loop; N/A, not applicable; ND, not determined as the concentration response curve did not reach plateau; N‐Ter, N‐terminus; TM, transmembrane domain.
Figure 3Dose response curves of the representative human GPR139 reduction‐of‐function mutants to endogenous ligands (A) L‐Phe and (B) L‐Trp in calcium mobilization assay. Data shown as means ± SD with triplicate measurements for each point (n = 3)
Representative human GPR139 receptor reduction‐of‐function random mutations radioligand binding assays summary
| Mutation |
|
|
|
|
|
|
| |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| L‐Phe | L‐Trp | TC‐O 9311 | JNJ‐3054 | L‐Phe | L‐Trp | TC‐O 9311 | JNJ‐3054 | |||||
| C286R | 12 ± 9 | 1187 ± 376 | 1.54 | 0.51 | 543 ± 21 | 517 ± 57 | 45 ± 11 | 25 ± 12 | 1.09 | 1.03 | 0.83 | 0.56 |
| T278I | 4 ± 4 | 1400 ± 439 | 0.57 | 0.59 | 306 ± 62 | 186 ± 28 | 42 ± 5 | 13 ± 4 | 0.59 | 0.37 | 0.44 | 0.54 |
| L86P | 142 ± 65 | 1066 ± 593 | 16.80 | 0.45 | 3231 ± 526 | 3833 ± 721 | 5952 ± 789 | 9755 ± 5589 | 139.27 | 42.59 | 363.16 | 78.13 |
| L41S | 5 ± 1 | 381 ± 146 | 0.59 | 0.16 | 591 ± 223 | 501 ± 70 | 39 ± 3 | 16 ± 2 | 1.12 | 0.99 | 0.58 | 0.50 |
| WT | 9 ± 2 | 2359 ± 297 | 1.00 | 1.00 | 523 ± 150 | 519 ± 158 | 81 ± 21 | 30 ± 9 | 1.00 | 1.00 | 1.00 | 1.00 |
Concentration binding of [3H]‐JNJ‐63533054 was determined using a saturation binding assay in HEK293 cells transiently transfected with mutated or wild‐type human GPR139. K d (nmol L−1) and B max (fg/mg protein) values are means ± SD (n = 3). K d and B max fold changes are expressed as a ratio, that EC50 of agonist of the mutation to the wild type. Competition of [3H]‐JNJ63533054 binding by L‐Phe, L‐Trp, TC‐O 9311 and JNJ‐63533054 were determined using a competitive inhibition assay in COS‐7 cells transiently transfected with mutated or wild‐type human GPR139 wild‐type human GPR139. Inhibition equilibrium constants (K i) values are means ± SD (n = 2). K i fold changes are expressed as a ratio, that EC50 of agonist of the mutation to the wild type.
Human GPR139 receptor loss‐of‐function random mutations with protein expression summary
| Mutation | Location | Total protein | Surface protein |
|---|---|---|---|
| %WT | %WT | ||
| H113Y P142Q | TM3, ICL2 | 93 | 109 |
| P238T V311C | TM6, C‐Ter | 50 | 42 |
| S197P F200Y | TM5, TM5 | 46 | 43 |
| L77F N331S | TM2, C‐ter | 44 | 32 |
| I248V Y285C | TM6, TM7 | 35 | 49 |
| N281D Y285H | TM7, TM7 | 29 | 31 |
| WT | 100 | 100 |
Total and surface protein expression values are expressed as the percentage of the mean absorbance value read against 450 nm of the wild‐type human GPR139, from one experiment with duplicate or triplicate measurements.
C‐Ter, C‐terminus; ICL, intercellular loop; TM, transmembrane domain.
Figure 4Homology model of hGPR139 with four docked ligands. (A) An overview of the ligand binding site with surface representation is shown color coded based on region with the deep hydrophobic region in green, polar region in yellow, and shallow hydrophobic region in olive. Detail views of the residues involved in (B) deep hydrophobic region, (C) polar region, and (D) shallow hydrophobic region are shown with the residues in sticks representation in green, yellow, and olive respectively. Each ligand is indicated in panel (C) and the color goes from darkest blue for the largest compound to the lightest blue for the smallest compound (TC‐O 9311, JNJ‐63533054, L‐Trp, L‐Phe)
Figure 5Selected single‐point gain‐of‐function and reduction‐of‐function mutations mapped onto a homology model of hGPR139. Homology model of hGPR139 (gray cartoon) with TC‐O 9311, JNJ‐63533054, L‐Trp, L‐Phe (various blue shaded sticks with the same coloring order in Figure 4) docked into the orthosteric pocket (transparent gray surface). Gain‐of‐function mutations are shown with carbon atoms as green spheres, and reduction‐of‐function mutations in with carbon atoms as pink spheres, nitrogen atoms are shown as blue and oxygen atoms as red spheres, respectively. Identified mutations are grouped by their impact on (A) orthosteric ligand binding site, (B) G‐protein binding area, and (C) GPR139 secondary or tertiary structure