Literature DB >> 30766014

A Modified Random Survival Forests Algorithm for High Dimensional Predictors and Self-Reported Outcomes.

Hui Xu1, Xiangdong Gu1, Mahlet G Tadesse2, Raji Balasubramanian1.   

Abstract

We present an ensemble tree-based algorithm for variable selection in high dimensional datasets, in settings where a time-to-event outcome is observed with error. The proposed methods are motivated by self-reported outcomes collected in large-scale epidemiologic studies, such as the Women's Health Initiative. The proposed methods equally apply to imperfect outcomes that arise in other settings such as data extracted from electronic medical records. To evaluate the performance of our proposed algorithm, we present results from simulation studies, considering both continuous and categorical covariates. We illustrate this approach to discover single nucleotide polymorphisms that are associated with incident Type II diabetes in the Women's Health Initiative. A freely available R package icRSF (R Core Team, 2018; Xu et al., 2018) has been developed to implement the proposed methods.

Entities:  

Keywords:  High Dimensional Data; Interval Censoring; Random Survival Forests; Self-reports; Variable Selection

Year:  2018        PMID: 30766014      PMCID: PMC6369914          DOI: 10.1080/10618600.2018.1474115

Source DB:  PubMed          Journal:  J Comput Graph Stat        ISSN: 1061-8600            Impact factor:   2.302


  4 in total

1.  Potential Prognostic Immune Biomarkers of Overall Survival in Ovarian Cancer Through Comprehensive Bioinformatics Analysis: A Novel Artificial Intelligence Survival Prediction System.

Authors:  Tingshan He; Liwen Huang; Jing Li; Peng Wang; Zhiqiao Zhang
Journal:  Front Med (Lausanne)       Date:  2021-05-24

2.  Bioinformatics analysis reveals immune prognostic markers for overall survival of colorectal cancer patients: a novel machine learning survival predictive system.

Authors:  Zhiqiao Zhang; Liwen Huang; Jing Li; Peng Wang
Journal:  BMC Bioinformatics       Date:  2022-04-08       Impact factor: 3.169

3.  Two precision medicine predictive tools for six malignant solid tumors: from gene-based research to clinical application.

Authors:  Zhiqiao Zhang; Tingshan He; Liwen Huang; Yanling Ouyang; Jing Li; Yiyan Huang; Peng Wang; Jianqiang Ding
Journal:  J Transl Med       Date:  2019-12-03       Impact factor: 5.531

4.  Bioinformatics Identified 17 Immune Genes as Prognostic Biomarkers for Breast Cancer: Application Study Based on Artificial Intelligence Algorithms.

Authors:  Zhiqiao Zhang; Jing Li; Tingshan He; Jianqiang Ding
Journal:  Front Oncol       Date:  2020-03-31       Impact factor: 6.244

  4 in total

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