| Literature DB >> 30761072 |
Ruinan Shen1, Suzhen Lin1, Lu He1, Xue Zhu2, Zhekun Zhou2, Shengdi Chen1, Ying Wang1, Jianqing Ding1.
Abstract
Background: Parkinson's disease (PD) is the most common neurodegenerative movement disorder that is known to be related to neuro-inflammation. Chemokines participate in this process usually through upregulation of expression levels, which are closely related to the polymorphisms in their genes. Recent studies have further revealed the association between these polymorphisms and the risk of PD in multiple populations, but not the Chinese Han population.Entities:
Keywords: CCL2; Chinese population; Parkinson's disease; polymorphism; risk factor
Year: 2019 PMID: 30761072 PMCID: PMC6362632 DOI: 10.3389/fneur.2019.00035
Source DB: PubMed Journal: Front Neurol ISSN: 1664-2295 Impact factor: 4.003
Characteristics of the study population.
| Total sample (N) | 411 | 422 | – | |
| Male (N) | 205 | 200 | 0.473 | |
| Female (N) | 206 | 222 | ||
| Age (Mean ± SD) | 65.32 ± 7.22 | 65.49 ± 7.34 | 0.746 | |
| 50~59(N) | 96 | 103 | ||
| ~69(N) | 196 | 196 | 0.979 | |
| ~79(N) | 109 | 104 | ||
| ~89(N) | 14 | 14 | ||
| Age of onset (Mean ± SD) | 61.07 ± 7.03 | N/A | ||
| Classification | TD | 72 | N/A | |
| AR | 91 | |||
| Mixed | 248 | |||
| H-Y Scale | 2.428 ± 0.772 | N/A | ||
| Time since PD diagnosis (month) | 56.84 ± 46.58 | N/A | ||
| Hypertension | 55 | 170 | <0.001 | |
| Diabetes | 13 | 45 | <0.001 | |
| Smoke | 109 | 100 | 0.472 | |
| Alcohol | 60 | 77 | 0.132 | |
PCR primers.
| MCP-1 | For:5′-TTTCCCTTGTGTGTCCCCAAG-3′ | 976 | |
| (rs1024611) | Rev:5′-CTGCTTTGCTTGTGCCTCTT-3′ | ||
| MCP1 vectors | For: 5′- CGGGGTACCTTTCCCTTGTGTGTCCCCAAG-3′ | 985 |
The touch down (TD) of PCR means a programmed temperature reduction from 68 to 53°C in 10 cycles (1.5°C/cycle), continuing with 20 cycles of 53°C during annealing stage.
Figure 1A newly detected mutation GRCh38.p12chr17:.34252593 G>C in CCL2. (A,B) We amplified promoter region of CCL2 and sequenced the anti-sense strand of it. Then we compared our sequence data with data on NCBI dbSNP database, and found rs1024611 and GRCh38.p12chr17:.34252593 G>. Unlike rs1024611 green line in (A) and green box in (B), GRCh38.p12chr17:.34252593 G>C blue line in figure (A) and red box in figure (B) has no annotation in the database. (C) Shown are three control (homozygous GG) and seven heterozygous (GC) PD patients for the GRCh38 p12chr17:.34252593 allele. Base pair in red square is GRCh38.p12chr17:.34252593. Double peak with ratio >1:3 will be recognized as heterozygous. (D) Sequence of rs1024611 of the same 10 subjects above.
Association between genotype and allele of polymorphisms and sporadic Parkinson's disease.
| CCL2 | rs1024611 | EAS | 0.547 | TT | CT | CC | T | C | 0.746 | |||
| AFR | 0.228 | PD | 58 | 166 | 175 | 282 | 516 | (0.610–0.911) | ||||
| SAS | 0.321 | Control | 0.384 | 80 | 186 | 143 | 346 | 472 | ||||
| CCL2 | GRCh38.p | N.A. | GG | CG | CC | G | C | 1.009 | ||||
| PD | 392 | 7 | 0 | 791 | 7 | (1.002–1.012) | ||||||
| Control | N/A | 422 | 0 | 0 | 844 | 0 | ||||||
HWE, Hardy-Weinburg equilibrium; MAF, Minor Allele Frequency, represent frequency of alternated allele in different populations, including; EAS, East Asian; EUR, European; AFR, African; AMR, Ad Mixed American; SAS, South Asian; (data from Allele Frequency Database) OR, odds ratio; CI, Confidence Interval. Bold indicates statistical significant values.
Genetic model of polymorphism.
| Homozygous | OR | 0.592 | N/A |
| CI (95%) | 0.396–0.887 | N/A | |
| N/A | |||
| Dominant model | OR | 0.688 | 1.018 |
| CI (95%) | 0.518–0.914 | 1.005–1.031 | |
| Recessive model | OR | 0.699 | N/A |
| CI (95%) | 0.483–1.013 | N/A | |
| 0.058 | N/A | ||
| Additive model | OR | 0.762 | N/A |
| CI (95%) | 0.627–0.925 | N/A | |
| N/A | |||
Bold indicates statistical significant values.
Stratification analysis of the four SNPs.
| Gender | Male | 0.030 | |
| Female | 0.144 | 0.224 | |
| Classification | 0.025 | ||
| (AR/TD/MX) | |||
| HTN | Without | 0.043 | |
| D2M | Without | ||
All data shown are p-value. Bold indicates statistical significant values.
Figure 2Luciferase assay of rs1024611 and GRCh38.p12chr17:.34252593 G>C. SH-SY5Y cells were transfected with p-C, p-T (rs1024611 SNPs), n-G, n-C (GRCh38 p12chr17:34252593), or pGL3-basic empty plasmid (as a negative control) and transcriptional activity was assessed using a luciferase assay. The control had significantly less transcriptional activity compared to wildtype and mutant alleles (p <0.0001). The C alleles for both SNPs had significantly greater transcriptional activity compared to their wildtype controls (****p < 0.0001).
Figure 3Meta-analysis for the association of rs1024611 with PD. Forest plot for the association between rs1024611 polymorphism and genetic susceptibility to PD (CC vs. Total). Squares boxes indicate the odds ratios and the size of the box is proportional to the weight of the study. Dashed vertical lines represent the null value (OR = 1.0). Horizontal lines represent the 95% confidence intervals.