Literature DB >> 30760498

Long-Range Chromatin Interactions in the Kidney.

Yuting Guan1,2, Hongbo Liu1,2, Katalin Susztak3,2.   

Abstract

Keywords:  DAB2; GWAS; Hi-C; kidney

Year:  2019        PMID： 30760498      PMCID： PMC6405157          DOI： 10.1681/ASN.2019010044

Source DB:  PubMed          Journal:  J Am Soc Nephrol        ISSN： 1046-6673            Impact factor:   10.121


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  10 in total

1.  The structure of haplotype blocks in the human genome.

Authors:  Stacey B Gabriel; Stephen F Schaffner; Huy Nguyen; Jamie M Moore; Jessica Roy; Brendan Blumenstiel; John Higgins; Matthew DeFelice; Amy Lochner; Maura Faggart; Shau Neen Liu-Cordero; Charles Rotimi; Adebowale Adeyemo; Richard Cooper; Ryk Ward; Eric S Lander; Mark J Daly; David Altshuler
Journal:  Science       Date:  2002-05-23       Impact factor: 47.728

Review 2.  Understanding the epigenetic syntax for the genetic alphabet in the kidney.

Authors:  Katalin Susztak
Journal:  J Am Soc Nephrol       Date:  2013-10-31       Impact factor: 10.121

3.  Integrated Functional Genomic Analysis Enables Annotation of Kidney Genome-Wide Association Study Loci.

Authors:  Karsten B Sieber; Anna Batorsky; Kyle Siebenthall; Kelly L Hudkins; Jeff D Vierstra; Shawn Sullivan; Aakash Sur; Michelle McNulty; Richard Sandstrom; Alex Reynolds; Daniel Bates; Morgan Diegel; Douglass Dunn; Jemma Nelson; Michael Buckley; Rajinder Kaul; Matthew G Sampson; Jonathan Himmelfarb; Charles E Alpers; Dawn Waterworth; Shreeram Akilesh
Journal:  J Am Soc Nephrol       Date:  2019-02-13       Impact factor: 10.121

4.  Systematic localization of common disease-associated variation in regulatory DNA.

Authors:  Matthew T Maurano; Richard Humbert; Eric Rynes; Robert E Thurman; Eric Haugen; Hao Wang; Alex P Reynolds; Richard Sandstrom; Hongzhu Qu; Jennifer Brody; Anthony Shafer; Fidencio Neri; Kristen Lee; Tanya Kutyavin; Sandra Stehling-Sun; Audra K Johnson; Theresa K Canfield; Erika Giste; Morgan Diegel; Daniel Bates; R Scott Hansen; Shane Neph; Peter J Sabo; Shelly Heimfeld; Antony Raubitschek; Steven Ziegler; Chris Cotsapas; Nona Sotoodehnia; Ian Glass; Shamil R Sunyaev; Rajinder Kaul; John A Stamatoyannopoulos
Journal:  Science       Date:  2012-09-05       Impact factor: 47.728

5.  An eQTL Landscape of Kidney Tissue in Human Nephrotic Syndrome.

Authors:  Christopher E Gillies; Rosemary Putler; Rajasree Menon; Edgar Otto; Kalyn Yasutake; Viji Nair; Paul Hoover; David Lieb; Shuqiang Li; Sean Eddy; Damian Fermin; Michelle T McNulty; Nir Hacohen; Krzysztof Kiryluk; Matthias Kretzler; Xiaoquan Wen; Matthew G Sampson
Journal:  Am J Hum Genet       Date:  2018-07-26       Impact factor: 11.025

6.  Genetic-Variation-Driven Gene-Expression Changes Highlight Genes with Important Functions for Kidney Disease.

Authors:  Yi-An Ko; Huiguang Yi; Chengxiang Qiu; Shizheng Huang; Jihwan Park; Nora Ledo; Anna Köttgen; Hongzhe Li; Daniel J Rader; Michael A Pack; Christopher D Brown; Katalin Susztak
Journal:  Am J Hum Genet       Date:  2017-06-01       Impact factor: 11.025

7.  Hi-C: a comprehensive technique to capture the conformation of genomes.

Authors:  Jon-Matthew Belton; Rachel Patton McCord; Johan Harmen Gibcus; Natalia Naumova; Ye Zhan; Job Dekker
Journal:  Methods       Date:  2012-05-29       Impact factor: 3.608

8.  Epigenome-wide association studies identify DNA methylation associated with kidney function.

Authors:  Audrey Y Chu; Adrienne Tin; Pascal Schlosser; Yi-An Ko; Chengxiang Qiu; Chen Yao; Roby Joehanes; Morgan E Grams; Liming Liang; Caroline A Gluck; Chunyu Liu; Josef Coresh; Shih-Jen Hwang; Daniel Levy; Eric Boerwinkle; James S Pankow; Qiong Yang; Myriam Fornage; Caroline S Fox; Katalin Susztak; Anna Köttgen
Journal:  Nat Commun       Date:  2017-11-03       Impact factor: 14.919

9.  Renal compartment-specific genetic variation analyses identify new pathways in chronic kidney disease.

Authors:  Chengxiang Qiu; Shizheng Huang; Jihwan Park; YoSon Park; Yi-An Ko; Matthew J Seasock; Joshua S Bryer; Xiang-Xi Xu; Wen-Chao Song; Matthew Palmer; Jon Hill; Paolo Guarnieri; Julie Hawkins; Carine M Boustany-Kari; Steven S Pullen; Christopher D Brown; Katalin Susztak
Journal:  Nat Med       Date:  2018-10-01       Impact factor: 53.440

10.  Trans-ethnic kidney function association study reveals putative causal genes and effects on kidney-specific disease aetiologies.

Authors:  Andrew P Morris; Thu H Le; Haojia Wu; Artur Akbarov; Peter J van der Most; Gibran Hemani; George Davey Smith; Anubha Mahajan; Kyle J Gaulton; Girish N Nadkarni; Adan Valladares-Salgado; Niels Wacher-Rodarte; Josyf C Mychaleckyj; Nicole D Dueker; Xiuqing Guo; Yang Hai; Jeffrey Haessler; Yoichiro Kamatani; Adrienne M Stilp; Gu Zhu; James P Cook; Johan Ärnlöv; Susan H Blanton; Martin H de Borst; Erwin P Bottinger; Thomas A Buchanan; Sylvia Cechova; Fadi J Charchar; Pei-Lun Chu; Jeffrey Damman; James Eales; Ali G Gharavi; Vilmantas Giedraitis; Andrew C Heath; Eli Ipp; Krzysztof Kiryluk; Holly J Kramer; Michiaki Kubo; Anders Larsson; Cecilia M Lindgren; Yingchang Lu; Pamela A F Madden; Grant W Montgomery; George J Papanicolaou; Leslie J Raffel; Ralph L Sacco; Elena Sanchez; Holger Stark; Johan Sundstrom; Kent D Taylor; Anny H Xiang; Aleksandra Zivkovic; Lars Lind; Erik Ingelsson; Nicholas G Martin; John B Whitfield; Jianwen Cai; Cathy C Laurie; Yukinori Okada; Koichi Matsuda; Charles Kooperberg; Yii-Der Ida Chen; Tatjana Rundek; Stephen S Rich; Ruth J F Loos; Esteban J Parra; Miguel Cruz; Jerome I Rotter; Harold Snieder; Maciej Tomaszewski; Benjamin D Humphreys; Nora Franceschini
Journal:  Nat Commun       Date:  2019-01-03       Impact factor: 14.919
  10 in total
  1 in total

1.  Chromatin architecture reveals cell type-specific target genes for kidney disease risk variants.

Authors:  Aiping Duan; Hong Wang; Yan Zhu; Qi Wang; Jing Zhang; Qing Hou; Yuexian Xing; Jinsong Shi; Jinhua Hou; Zhaohui Qin; Zhaohong Chen; Zhihong Liu; Jingping Yang
Journal:  BMC Biol       Date:  2021-02-24       Impact factor: 7.431
  1 in total

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