| Literature DB >> 30745802 |
Alla M Zaydman1, Elena L Strokova1, Alena O Stepanova2,3, Pavel P Laktionov2,3, Alexander I Shevchenko4, Vladimir M Subbotin5,6.
Abstract
Background: In a previous report, we demonstrated the presence of cells with a neural/glial phenotype on the concave side of the vertebral body growth plate in Idiopathic Scoliosis (IS) and proposed this phenotype alteration as the main etiological factor of IS. In the present study, we utilized the same specimens of vertebral body growth plates removed during surgery for Grade III-IV IS to analyse gene expression. We suggested that phenotype changes observed on the concave side of the vertebral body growth plate can be associated with altered expression of particular genes, which in turn compromise mechanical properties of the concave side.Entities:
Keywords: gene expression; idiopathic scoliosis; vertebral body growth plate
Mesh:
Substances:
Year: 2019 PMID: 30745802 PMCID: PMC6367535 DOI: 10.7150/ijms.29312
Source DB: PubMed Journal: Int J Med Sci ISSN: 1449-1907 Impact factor: 3.738
List of genes, primers, and conditions of Real-Time SYBR Green I PCR
| № | Name of gene | Sequence of primers | Size of fragment (nucleotides) | PCR conditions |
|---|---|---|---|---|
| 1 | GAPDH | F: TGAAGGTCGGAGTCAACGGATTTGGT | 258 | 1. 95º С - 3,5 min |
| 2 | ACAN | F: GGCGAGCACTGTAACATAGACCAGG | 206 | 1. 95ºС - 3,5 min. |
| 3 | LUM | F:ACCTGGAGGTCAATCAACTTGAGAAGTTTG | 172 | 1. 95º С - 3,5 min |
| 4 | VCAN | F: CTGGCAAGTGATGCGGGTCTTTACC | 278 | 1. 95º С - 3,5 min |
| 5 | COL1A1 | F: GAAGACATCCCACCAATCACCTGCGTA | 227 | 1. 95º С - 3,5 min |
| 6 | COL2A1 | F: AAGGAGACAGAGGAGAAGCTGGTGC | 299 | 1. 95º С - 3,5 min |
| 7 | HAPLN1 | F: GGTAGCACTGGACTTACAAGGTGTGGT | 222 | 1. 95º С - 3 min |
| 8 | PAX1 | F: AACATCCTGGGCATCCGGACGTTTA | 194 | 1. 95º С - 3,5 min |
| 9 | PAX9 | F: CTCCATCACCGACCAAGTGAGCGA | 212 | 1. 95º С - 3,5 min |
| 10 | SOX9 | F: ACTACACCGACCACCAGAACTCCAG | 206 | 1. 95º С - 3,5 min |
| 11 | IHH | F: GATGAACCAGTGGCCCGGTGTG | 233 | 1. 95º С - 3,5 min |
| 12 | GHR | F: TGCCCCCAGTTCCAGTTCCAAAGAT | 284 | 1. 95º С - 3,5 min |
| 13 | IGF1R | F: CGCACCAATGCTTCAGTTCCTTCCA | 266 | 1. 95º С - 3,5 min |
| 14 | EGFR | F: ATAGACGACACCTTCCTCCCAGTGC | 177 | 1. 95º С - 3,5 min |
| 15 | TGFBR1 | F: GGGCGACGGCGTTACAGTGTT | 179 | 1. 95º С - 3,5 min. |
| 16 | SLC26A2 | F: CCTGTTTTGCAGTGGCTCCCAA | 208 | 1. 95º С - 3,5 min. |
| 17 | CHST1 | F: ATACGGCACCGTGCGAAACTCG | 165 | 1. 95º С - 3,5 min. |
| 18 | CHST3 | F: AGAAAGGACTCACTTTGCCCCAGGA | 268 | 1. 95º С - 3,5 min. |
Figure 3Growth factors and chondroblast gene expression levels in vertebral body growth plates and fetal vertebra are shown using SYBR-Green real time RT-PCR. Relative gene expression is calculated with respect to the GAPDH mRNA concentration as an internal control. Error bars represent standard deviation in each point. * - significant difference (р < 0,05). А. Genes encoding growth factors, B. Genes encoding transcription factors, C. Genes encoding PGs, D. Genes encoding sulfate group metabolism-related proteins.
Characteristics of PG of the vertebral body growth plates from different sides of curvature in IS patients (PG output is calculated in µg per mg of tissue wet weight. The relative amount of PG2 in the pool is shown as a percentage in parentheses).
| Convex side of deformity | Concave side of deformity | |||
|---|---|---|---|---|
| n=18 | n=18 | |||
| PG1 | PG2 | PG1 | PG2 | |
| PG output | 18,4±2,25 | 38,2±3,89* | 10,2±1,56*1 | 28,8±1,74*1.2 |
| CS/KS | 1,28+0,098 | 0,75+0,058* | 0,81+0,065*1 | 0,59+0,041*1.2 |
| Degree of sulfation (%) | 30,2±2,78 | 5,7±0,65* | 18,4±0,15*1 | 7,7±0,84*2 |
PG1 - diffused PG; PG2 - PGs linked with collagen; * - significant difference р<0,05; *1 - significant difference from analogous pool of convex side *2 - Significant difference from PG of convex side
Figure 1The vertebral body growth plate from the convex (A) and concave (B) sides of deformity in an IS patient. Hematoxylin & eosin staining, x200. Intensive staining for high polymeric CS on the convex side (C) and diminishing staining for high polymeric CS in the concave side, (Hale's reaction), x200.
Figure 2Ultrastructural organization of chondroblasts of the vertebral body growth plate from the convex (A) and concave (B) sides of a deformity in IS, x5000.
Figure 4Factor analysis of chondroblast gene expression in IS vertebra and normal fetal vertebra. Control samples (isolated from normal fetal vertebra) are marked in red, and samples isolated from the concave and convex sides of damaged IS vertebra are marked in blue.